| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0175 |
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| Symbol | pnpA |
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| ID | 7388336 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 162773 |
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| End bp | 164917 |
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| Gene Length | 2145 bp |
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| Protein Length | 714 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643649892 |
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| Product | polynucleotide phosphorylase/polyadenylase |
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| Protein accession | YP_002548110 |
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| Protein GI | 222147153 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) |
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| TIGRFAM ID | [TIGR03591] polyribonucleotide nucleotidyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTAATG TTCACAGCGT TGAAATCGAG TGGGCCGGCC GGCCGCTGAA GCTGGAAACC
GGCAAGATCG CCCGTCAGGC TGACGGCGCC GTTCTCGCCA GCTACGGCGA GACCGTTGTT
CTGGCCACCG TCGTTTCCGC CAAGTCGCCG AAGCCGGGTC AGGATTTCTT CCCGCTCACC
GTCAACTATC AGGAAAAGAC CTATGCCGCC GGTAAGATCC CGGGTGGCTA TTTCAAGCGC
GAAGGCCGTC CGAGCGAAAA GGAAACCCTG GTTTCCCGCC TGATCGACCG CCCGATCCGC
CCACTTTTCC CGGAAGGTTA CAAGAACGAC ACCCAGGTCG TCGTGACCGT TATTCAGCAC
GACCTTGAAA ACGATCCGGA CGTTCTGTCG ATGGTTGCCG CTTCGGCTGC CCTGACACTG
TCTGGCGTAC CGTTCATGGG CCCGGTCGGC GGTGCGCGCG TTGGCTATAT CAATGGCGAA
TACGTTCTCA ACCCGCATCT CGACGAGATG GATGAATCCG TTCTCGACCT CGTGGTTGCC
GGTACGCAGG ATGCCGTCCT GATGGTTGAA TCCGAAGCCA AGGAACTGAA CGAAGACGTC
ATGCTCGGCG CCGTGATGTT CGGTCACCGT GGCTTCCAGC CGGTCATCGA CGCGATCATC
AAGCTCGCCG AAGTGGCTGC CAAGGAGCCG CGCGAATTCG AACCGGAAGA TCATTCCGCT
CTCGAAGCCG AAATGCTCTC GATTGCCGAA GCCGAACTGC GCGACGCCTA CAAGATCACC
CAGAAGGCTG ATCGTTATAC GGCCGTCGAT GCCGTAAAGG CCAAGGTCAA GGCACACTTC
TTTCCAGAGG GTGCAGAGCC TAAATACACC AACGAAGTGA TCGGCGCGGT CTTCAAGCAC
CTGCAAGCCA AGATCGTTCG CTGGAACATT CTCGACACCA AGAGCCGTAT CGATGGCCGT
GACCTCGAAA CGGTTCGTGC GATTGTCTCC GAAGTCGGCA TCCTGCCGCG TACGCACGGT
TCGGCGCTGT TTACCCGTGG CGAAACCCAG GCGATCGTGG TTGCCACGCT CGGCACTGGC
GAAGATGAGC AGTATGTTGA CAGCCTGACG GGCATGTACA AGGAACGTTT CCTTCTGCAT
TACAACTTCC CTCCTTATTC GGTTGGTGAA ACTGGCCGCA TGGGCTCCCC GGGCCGCCGC
GAAATCGGCC ATGGCAAGCT GGCATGGCGC GCCATTCGCC CGATGCTGCC TTCGCCTGAA
CAGTTCCCCT ACACGCTGCG CGTCGTCTCC GAGATCACCG AATCGAACGG CTCGTCCTCG
ATGGCAACGG TTTGCGGCAC CTCGCTGGCG CTGATGGATG CGGGCGTTCC GCTGGCCAAG
CCGGTTGCTG GTATCGCCAT GGGCCTGATC CTGGAAGGCG AGCGTTTTGC TGTTCTCTCC
GACATTCTCG GCGATGAAGA TCATCTCGGC GATATGGACT TCAAGGTGGC TGGTACGGAA
GCCGGTATCA CCTCGTTGCA GATGGACATC AAGATCGCCG GTATTACCGA AGAGATCATG
AAGGTTGCCC TGGCGCAGGC CCAGAACGGC CGCAAGCACA TTCTCGGCGA AATGGCCAAT
GCCATCACCG AAGGTCGCTC GCAGCTCGGC GAATTCGCAC CGCGCATCGA AGTCATGACC
ATCCCGGTCG ATAAGATCCG TGAAGTCATC GGTTCCGGTG GTAAGGTTAT CCGCGAAATC
GTCGAAAAAA CCGGCGCCAA GATCAACATC GAAGACGATG GTACGATCAA GATCGCCTCT
GCTTCCGGTA AGGAAATCGA AGCCGCCCGC AAGTGGATTC ACTCGATCGT TGCTGAGCCT
GAAATCGGCG TTGTCTATGA AGGCACGGTC GTCAAGACCG CTGACTTCGG CGCTTTCGTC
AATTTCTTCG GTTCGCGAGA CGGTCTCGTC CACATCAGCC AGCTGGCTGT AGACCGTGTT
GCCAAGACCC AGGATGTGGT CAAGGAAGGC GACAAGGTTT GGGTCAAGCT GATGGGCTTT
GACGAGCGCG GCAAGGTTCG CCTGTCCATG AAGGTTGTCG ATCAGGCAAC CGGCAAGGAA
ATCGTCGGCG ACAAGAAGGC CGAAGGCGAC GCTGCCGCTG AATAA
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| Protein sequence | MFNVHSVEIE WAGRPLKLET GKIARQADGA VLASYGETVV LATVVSAKSP KPGQDFFPLT
VNYQEKTYAA GKIPGGYFKR EGRPSEKETL VSRLIDRPIR PLFPEGYKND TQVVVTVIQH
DLENDPDVLS MVAASAALTL SGVPFMGPVG GARVGYINGE YVLNPHLDEM DESVLDLVVA
GTQDAVLMVE SEAKELNEDV MLGAVMFGHR GFQPVIDAII KLAEVAAKEP REFEPEDHSA
LEAEMLSIAE AELRDAYKIT QKADRYTAVD AVKAKVKAHF FPEGAEPKYT NEVIGAVFKH
LQAKIVRWNI LDTKSRIDGR DLETVRAIVS EVGILPRTHG SALFTRGETQ AIVVATLGTG
EDEQYVDSLT GMYKERFLLH YNFPPYSVGE TGRMGSPGRR EIGHGKLAWR AIRPMLPSPE
QFPYTLRVVS EITESNGSSS MATVCGTSLA LMDAGVPLAK PVAGIAMGLI LEGERFAVLS
DILGDEDHLG DMDFKVAGTE AGITSLQMDI KIAGITEEIM KVALAQAQNG RKHILGEMAN
AITEGRSQLG EFAPRIEVMT IPVDKIREVI GSGGKVIREI VEKTGAKINI EDDGTIKIAS
ASGKEIEAAR KWIHSIVAEP EIGVVYEGTV VKTADFGAFV NFFGSRDGLV HISQLAVDRV
AKTQDVVKEG DKVWVKLMGF DERGKVRLSM KVVDQATGKE IVGDKKAEGD AAAE
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