Gene Avi_0168 details

Gene Information

• Locus tag: Avi_0168
• ID: 7388331
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 156784
• End bp: 157479
• Gene Length: 696 bp
• Protein Length: 231 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 643649887
• Product: hypothetical protein
• Protein accession: YP_002548105
• Protein GI: 222147148
• COG category: [K] Transcription
• COG ID: [COG2740] Predicted nucleic-acid-binding protein implicated in transcription termination

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCCTCCG ATCCATCTTT GGAGGACGGG CGTCCGGCAA AGCCGGTGAA GGCGGTAAAG 
GACGGTCAGA ACGACCGGAC GTGCATCGTC ACCCGCCAGC CGGGAACGCC AGATACACTG 
ATCCGGTTCG TGGCAGGCCC TGATGGGACG CTCGTGCCGG ATCTGAAACG GGAATTGCCT 
GGCCGTGGCT GCTGGGTGTC TGTTTCCCGC GAGGCCGTGG ACAAGGCTGT GGCGAAAAAG 
CTTTTCGCCC GTGCCTTGAA GATGGATGTC ACCGTCGATC CCGAAATGGG AGCGCGTGTG 
GACAGGCTGC TTGTCCAGCA GCTGGCGGGA ATGATGAACC TGGCGCGCAA GGCGGGCCAG 
TTTGTAACCG GGTCGGCCAA GGTCGATCTC GCGATCCGCA GCGGTGCCGC GCTCGGCGTG 
TTTCACGCCA CCGATGCCGC CGCAGATGGC GTTCGAAAAC TGGACCAGGC CCGCAAGGCC 
TGGCATCTCG GAATGGAAAC GGACGAGGAA ATTCCCTCTT ATCGGCTCTT TTCCGAGGCG 
GAAATGCAAG AACTGATGGG CCAGAACGCT TTTATCCATG CCTGCGCGCT TGCAGGACAG 
GCGGGTGAAG GTGTAGTGAA GCGCGCAACT CTGCTTGAAA CCTATCGTGG CCTTTCGCCG 
CGGATGGCGA GTAGCGCTGG CCGTAAACCA CAATGA 

 

Protein sequence

MASDPSLEDG RPAKPVKAVK DGQNDRTCIV TRQPGTPDTL IRFVAGPDGT LVPDLKRELP 
GRGCWVSVSR EAVDKAVAKK LFARALKMDV TVDPEMGARV DRLLVQQLAG MMNLARKAGQ 
FVTGSAKVDL AIRSGAALGV FHATDAAADG VRKLDQARKA WHLGMETDEE IPSYRLFSEA 
EMQELMGQNA FIHACALAGQ AGEGVVKRAT LLETYRGLSP RMASSAGRKP Q