| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0166 |
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| Symbol | nusA |
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| ID | 7388330 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 155168 |
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| End bp | 156784 |
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| Gene Length | 1617 bp |
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| Protein Length | 538 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643649886 |
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| Product | transcription elongation factor NusA |
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| Protein accession | YP_002548104 |
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| Protein GI | 222147147 |
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| COG category | [K] Transcription |
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| COG ID | [COG0195] Transcription elongation factor |
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| TIGRFAM ID | [TIGR01953] transcription termination factor NusA
[TIGR01954] transcription termination factor NusA, C-terminal duplication |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.590136 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAGTCA GTGCTAATCG GCTCGAGCTG TTGCAGATCG CGGATGCGGT CGCACGCGAA
AAAGTCATCG ACCGCGAAAT CGTGCTTGCT GCGATGGCTG ACGCCATCCA GAAGGCCGCG
CGTTCGCGTT ACGGTTCCGA GACCAATATT CGCGCCGACA TCAACTCCAA GACCGGCGAG
ATTCGTCTGC AGCGCCTGCT CGAAGTGGTC GAAACCGTCG AGGATTACGG CACCCAGATC
GCACTCGAAC TGGCGCGCGA CCGCAATGTT GACGCCAAGC TCGGTGATTA CATTGCCGAT
CCGCTGCCGC CGATGGATTT CGGTCGGATC GCCGCCCAGT CCGCCAAGCA GGTTATCGTG
CAGAAAGTGC GCGAAGCCGA GCGTGATCGG CAGTTCGATG AGTTCAAGGA TCGCGTCGGC
GAAATCATCA ACGGCACGGT CAAGCGCGTC GAATATGGCA ATGTCATCGT CGATCTCGGT
CGTGGCGAAG GCATTATCCG CCGCGATGAA ATGATCCCGC GCGAAACCAT GCGTTATGGT
GACCGCGTTC GCGCCTATGT CTATGACGTG CGCCGCGAAC AGCGTGGCCC GCAGATTTTC
CTGTCGCGCA CCCATCCGCA GTTCATGGTG AAACTGTTCA CCATGGAAGT GCCGGAAATT
TACGACGGCG TCATCCAGAT CAAGTCGGTG GCCCGTGACC CGGGTTCTCG CGCCAAGATC
GCAGTGATTT CCAACGACAG CTCGATCGAT CCGGTCGGTG CTTGCGTCGG TATGCGCGGT
TCGCGTGTTC AGGCCGTGGT TGGTGAATTG CAGGGCGAAA AGATCGATAT CATTCCGTGG
TCGGCAGACC CGGCATCCTT CATCGTCAAC GCGCTTCAAC CGGCAGAAGT TGCCAAAGTG
GTGCTGGACG AAGATGCCGA GCGCATCGAA GTGGTTGTTC CCGATGAGCA GCTGTCGCTG
GCCATCGGCC GTCGCGGCCA GAATGTCCGC CTGGCGTCGC AGCTGACCGG CTGGGATATC
GACATCATGA CGGAAGCGGA AGAATCCGAG CGCCGCCAGA AGGAATTCAA CGAGCGCACC
AACCTGTTCA TGGATGCGCT CGACGTCGAT GAAATGGTTG GCCAGGTTCT GGCGTCGGAA
GGCTTTGCCC AGGTTGAAGA GCTTGCCTAT GTCGATCTGG AGGAAATCGC TTCCATCGAT
GGTTTTGACG GCGATACCGC AGAAGAAATC CAGACCCGCG CCCGCGAATA TCTCGAAAAG
CTGGAAGCCG AACTTGATGC CAAGCGCAAG GCGCTCGGCG TGTCCGACGA GCTGCGCAGC
ATTGATGGCA TGACAACGCA AATGTTGGTT GCGCTCGGGG GAGACGGCAT CAAGACGGTC
GAGGATTTCG CCGGCTGCGC TGCTGACGAC CTGATCGGCT GGAGTGAGCG TAAGGATGGC
GAGACCAAGA AATTCGAGGG CCTGTTCTCG AAAATCGACA TTTCTCGCAC CGAAGCGGAA
CAGATGATCG TTCAGGCTCG CCTGGCGGCT GGCTGGATCA CCGAAGCGGA TATTGCCGCC
GAGGCTGAGG CAGAAGTCGT CGAGGATGAG GCGCAAGAGG CTGAGCAGGG CTCGTGA
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| Protein sequence | MAVSANRLEL LQIADAVARE KVIDREIVLA AMADAIQKAA RSRYGSETNI RADINSKTGE
IRLQRLLEVV ETVEDYGTQI ALELARDRNV DAKLGDYIAD PLPPMDFGRI AAQSAKQVIV
QKVREAERDR QFDEFKDRVG EIINGTVKRV EYGNVIVDLG RGEGIIRRDE MIPRETMRYG
DRVRAYVYDV RREQRGPQIF LSRTHPQFMV KLFTMEVPEI YDGVIQIKSV ARDPGSRAKI
AVISNDSSID PVGACVGMRG SRVQAVVGEL QGEKIDIIPW SADPASFIVN ALQPAEVAKV
VLDEDAERIE VVVPDEQLSL AIGRRGQNVR LASQLTGWDI DIMTEAEESE RRQKEFNERT
NLFMDALDVD EMVGQVLASE GFAQVEELAY VDLEEIASID GFDGDTAEEI QTRAREYLEK
LEAELDAKRK ALGVSDELRS IDGMTTQMLV ALGGDGIKTV EDFAGCAADD LIGWSERKDG
ETKKFEGLFS KIDISRTEAE QMIVQARLAA GWITEADIAA EAEAEVVEDE AQEAEQGS
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