Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_0120 |
Symbol | rnd |
ID | 7388297 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | - |
Start bp | 112465 |
End bp | 113091 |
Gene Length | 627 bp |
Protein Length | 208 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 643649853 |
Product | ribonuclease D |
Protein accession | YP_002548071 |
Protein GI | 222147114 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0349] Ribonuclease D |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.818192 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCTTCCA CCATTCGCTA CCATGAAGGT GATATCAGCA GCGAAGACGC GGCGCGCTAT ACCCGCGCCA TCGCCATCGA CACCGAAACG CTGGGGCTTA TCCCCCGCCG CGACCGGCTC TGCGTGGTGC AGCTTTCGCC GGGTGACGGC ACAGCCGACG TCATTCGCAT TGCGCCGGGC CAGCGCCAGG CGCCCAACCT GACCGCCCTG CTGGAAGACC CGACCCGGGA AAAAATCTTC CATTATGGCC GGTTCGACAT CGCCGTGCTG TTCCATACGT TTGGTGTCAC CACCACGCCG GTGTTCTGCA CGAAGATCGC CTCGCGTCTG TCGCGCACCT ATACCGACCG GCATGGACTA AAGGACAACC TCAAGGAAAT GCTGGATGTG GATGTGTCCA AGGCCCAGCA ATCCTCCGAC TGGGCGGCAG AAACGCTGTC TCCGGCGCAG CTCGAATATG CCGCCTCCGA CGTGCTCTAT CTGCATGCGC TGCGCGACAA GCTAACCGCC CGGCTGGTGC GCGATGGCCG CATGGACCAC GCCACCGCCT GCTTCGAGTT CCTGCCGACC CGGGCCAAAC TGGACCTGCT GGGCTGGGAA GAGACCGATA TTTTCGCCCA TAGCTGA
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Protein sequence | MASTIRYHEG DISSEDAARY TRAIAIDTET LGLIPRRDRL CVVQLSPGDG TADVIRIAPG QRQAPNLTAL LEDPTREKIF HYGRFDIAVL FHTFGVTTTP VFCTKIASRL SRTYTDRHGL KDNLKEMLDV DVSKAQQSSD WAAETLSPAQ LEYAASDVLY LHALRDKLTA RLVRDGRMDH ATACFEFLPT RAKLDLLGWE ETDIFAHS
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