Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_0118 |
Symbol | lepA |
ID | 7388296 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 110502 |
End bp | 112379 |
Gene Length | 1878 bp |
Protein Length | 625 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 643649852 |
Product | GTP-binding protein LepA |
Protein accession | YP_002548070 |
Protein GI | 222147113 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0481] Membrane GTPase LepA |
TIGRFAM ID | [TIGR00231] small GTP-binding protein domain [TIGR01393] GTP-binding protein LepA |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.0702827 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCCCCGCA TTTCCGCTTT GCGGCATGCG GGCGCGCTGC TATATGCGCA GGCCATGAGC ACACAGAACC GCACGCCTCT CGACCATATC CGCAACTTTT CCATCGTCGC CCATATCGAC CATGGAAAAT CGACGCTGGC CGACCGCCTG ATCCAGAATA CCGGCGGCCT TGCCGAACGG GAAATGTCGG AACAGGTGCT CGACAGCATG GACATCGAGC GCGAGCGCGG CATCACCATT AAGGCCCAGA CCGTGCGTCT GCATTACAAG GCCAATAATG GTGAAACCTA TGTGCTGAAC CTGATCGACA CGCCCGGCCA TGTGGACTTC GCCTATGAAG TCTCGCGGTC GCTGTCGGCC TGCGAAGGTT CGCTGCTGGT GGTGGATGCG TCCCAGGGCG TTGAAGCCCA GACGCTGGCC AATGTCTATC AGGCCATCGA CAACAATCAT GAGATCGTCA CCGTTCTCAA CAAGATCGAC TTGCCTGCCG CCGAACCGGA CCGGATCAAG GAGCAGATTG AGGAAGTCAT CGGCATCGAT GCCTCCGAAG CCGTGCTGAT TTCGGCCAAG ACCGGGCTTG GTATTCCCGA CGTCTTGGAA GCGATCGTTC ACAAGTTGCC CGCGCCGAAA AGCGCGCTGG GCGACAAGGG GCCGCTGAAA GCGCTGCTGG TCGATAGCTG GTACGATACC TATCTCGGCG TCATGGTTCT GGTGCGCGTT ATCGATGGCG TGCTGACCAA GGGCCAGACT ATCCGGATGA TGGGGACGGA TGCCAAATAC CAGGTAGAGC GCGTTGGCGT GCTGACGCCG AAAATGGTCG CCATGGACAG TCTCGGTCCC GGCGAAATCG GTTTCTTCAC CGGTTCGATC AAAGAAGTGG CCGATACCCG CGTCGGCGAT ACCATTACCG AAGACAAGCG TCCGACGGAA ACGATGCTGC CCGGCTTCAA ACCTGCCCAG CCGGTGGTGT TCTGTGGGTT GTTCCCGGTT GACGCCGCCG ATTTCGAGGA TCTTCGTGCT GCGATGGGCA AGCTGCGTCT CAATGATGCC AGCTTCTCTT TTGAGATGGA AAGCTCGGCG GCTCTCGGCT TCGGCTTCCG CTGTGGCTTC CTTGGCCTGT TGCATCTGGA AATCATCCAG GAGCGGCTTG AGCGTGAATT CGATCTCGAC CTGATCGCCA CGGCCCCTTC GGTTGTCTAC AAGCTGTTCA TGACCGATGG CAGCGAGCGT GAGCTGCACA ATCCCGCCGA TATGCCTGAC GTGGTGAAGA TCTCCGAGAT CCACGAGCCC TGGATCAAGG CGACGATCTT GACGCCGGAC GATTATCTCG GCGGCATCCT GAAGCTTTGC CAGGACCGGC GCGGCATCCA GACCGAACTC ACTTACGTGG GCAAGCGGGC CATGCTGACC TATGAGCTGC CACTCAACGA AGTGGTGTTC GATTTCTACG ACAGATTGAA ATCGATTTCC AAGGGCTATG CCTCGTTCGA TTACCATCTG GATGGCCACA AGGAAGGCAA TCTCGTCAAG ATGTCGATCC TCGTCAATGG CGAGCCGGTC GATGCATTGT CGATGATGGT TCACCGCATG GCAGCTGAAA AGCGTGGCCG TGACATGTGC GAAAAGCTCA AGGACCTGAT CCCCAAGCAC ATGTTCAAGA TCCCGATCCA GGCCGCTATC GGCAGCAATG TCATCGCCCG CGAAACCATT TCGGCGCTGC GCAAGGACGT GACCGCCAAG TGCTACGGTG GCGATGCCAG CCGCAAGCGC AAGCTGCTGG ACAAGCAGAA GGCCGGCAAG AAGCGGATGC GCCAGTTCGG CAAGGTCGAA ATCCCGCAGG AAGCGTTTAT TGCCGCTCTG AAAATGAGCG ACGAATAA
|
Protein sequence | MPRISALRHA GALLYAQAMS TQNRTPLDHI RNFSIVAHID HGKSTLADRL IQNTGGLAER EMSEQVLDSM DIERERGITI KAQTVRLHYK ANNGETYVLN LIDTPGHVDF AYEVSRSLSA CEGSLLVVDA SQGVEAQTLA NVYQAIDNNH EIVTVLNKID LPAAEPDRIK EQIEEVIGID ASEAVLISAK TGLGIPDVLE AIVHKLPAPK SALGDKGPLK ALLVDSWYDT YLGVMVLVRV IDGVLTKGQT IRMMGTDAKY QVERVGVLTP KMVAMDSLGP GEIGFFTGSI KEVADTRVGD TITEDKRPTE TMLPGFKPAQ PVVFCGLFPV DAADFEDLRA AMGKLRLNDA SFSFEMESSA ALGFGFRCGF LGLLHLEIIQ ERLEREFDLD LIATAPSVVY KLFMTDGSER ELHNPADMPD VVKISEIHEP WIKATILTPD DYLGGILKLC QDRRGIQTEL TYVGKRAMLT YELPLNEVVF DFYDRLKSIS KGYASFDYHL DGHKEGNLVK MSILVNGEPV DALSMMVHRM AAEKRGRDMC EKLKDLIPKH MFKIPIQAAI GSNVIARETI SALRKDVTAK CYGGDASRKR KLLDKQKAGK KRMRQFGKVE IPQEAFIAAL KMSDE
|
| |