Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_0103 |
Symbol | kdsB |
ID | 7388284 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 99408 |
End bp | 100238 |
Gene Length | 831 bp |
Protein Length | 276 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 643649840 |
Product | 3-deoxy-D-manno-octulosonate cytidylyltransferase |
Protein accession | YP_002548058 |
Protein GI | 222147101 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1212] CMP-2-keto-3-deoxyoctulosonic acid synthetase |
TIGRFAM ID | [TIGR00466] 3-deoxy-D-manno-octulosonate cytidylyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0796909 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGACAGTTG CAACCCGATT ATGCTCCGCC GCCCTGAGAC GTTTTGCCAC TTACCCCCAT TGCTTTCAAA GGCGAATACC GATGTCTGAC CATACACGCT TCAAAACCCT GGTTCTCATC CCCGCCCGCA TGGCCTCCAC AAGGCTTCCC GGTAAGCCCC TGGCTGACAT TGCCGGCCTG CCGATGATCG TCCAGGTGGC AAAGCGCGCA GCGGAGGCCA ATGTCGGACG TATCGTCGTG GCGGTGGATC ATCCTGACGT GTTCGCCACG GTGACGGCAG CCGGTTTTGA AGCCGTGATG ACCGGCGAGC AGCATCAATC CGGTTCCGAC CGCATCCATG AAGCGCTGCT GAAGGTCGAT CCGAAAGGCG AGGCCGAAAT CATCATCAAT GTTCAGGGTG ATCTGCCCAC CATTGACCCG GAGACGATTC GTGCCGCCTT GCGCCCCCTG GAGGACCCGC AGGTCGATAT CGCCACGCTG ACGGTGGAGA TCGAGGATGA GGCGGAAAAG ACCAATCCCA ACGTGGTGAA GGTTGTCGGC TCGCCGCTGT CGGACAATCG CCTGCGGGCG CTTTATTTTA CCCGCGCCAC CGCCCCGCAT GGCAAAGGAC CGCTTTATCA CCACATCGGC CTCTACGCCT ATCGCCGCGC TGCATTGGAA CGGTTCGTCG CGCTGTCTCC CTCGGTGCTG GAAAAGCGCG AATCGCTGGA ACAGTTGCGG GCGCTGGAAG CGGGCATGCG TATCGATGTC GAGATTGTCG ATACTGTGCC GCTTGGCGTC GATACAGCGG CGGATTTGGA AAAAGCCCGC GCCATTCTGG CTGCAAAATA A
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Protein sequence | MTVATRLCSA ALRRFATYPH CFQRRIPMSD HTRFKTLVLI PARMASTRLP GKPLADIAGL PMIVQVAKRA AEANVGRIVV AVDHPDVFAT VTAAGFEAVM TGEQHQSGSD RIHEALLKVD PKGEAEIIIN VQGDLPTIDP ETIRAALRPL EDPQVDIATL TVEIEDEAEK TNPNVVKVVG SPLSDNRLRA LYFTRATAPH GKGPLYHHIG LYAYRRAALE RFVALSPSVL EKRESLEQLR ALEAGMRIDV EIVDTVPLGV DTAADLEKAR AILAAK
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