Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_0098 |
Symbol | |
ID | 7388280 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 95833 |
End bp | 96558 |
Gene Length | 726 bp |
Protein Length | 241 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 643649836 |
Product | ABC transporter membrane spanning protein (sugar) |
Protein accession | YP_002548054 |
Protein GI | 222147097 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0395] ABC-type sugar transport system, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.152339 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCTTCA AGAGCAATCA GGAAATCCTC AGTTCCCTGA CGCTCTATCC GCATGAGCCG ACGCTGAAGA ATTACATCAC GATTTTCACC GACCGGTCCT GGTATTCGGG TTATATCAAC TCGATCATCT ATGTGGTGCA GAATATGGTA ATTTCGGTCG CCTGCGCGCT TCCGGCTGCC TATGCCTTCT CGCGCTACCG GTTTCTGGGC GACAAGCACC TGTTCTTTTG GCTGCTGACC AACCGCATGG CACCACCCGC CGTGTTTGCC CTGCCGTTTT TCCAGCTCTA TTCGGCCTTT GACATGATCG ACACGCATAT TGCGGTGGCG CTGGCCCATT GCCTGTTCAA CGTGCCGCTG GCGGTGTGGA TTTTGGAAGG TTTCATGTCC GGTATCCCCA AGGAAATCGA TGAAACGGCT TATATCGACG GCTATTCATT TCCCCGCTTT TTCGTGAAGA TCTTCATACC GCTGATTGCT TCCGGCATCG GGGTCGCGGC CTTCTTCTGC TTCATGTTCT CATGGGTGGA GCTGCTGATC GCCCGCACGC TGACCACTGT CGATGCCAAG CCGATTGCGG CCGTGATGAC CCGCACGGTG TCAGCATCCG GCGTCGATTG GGGCCTGCTG GCCGCAGCCG GTGTGCTGAC GCTGATTCCC GGTGCCGTGG TGATCTATTT TGTCCGCAAT TATATCGCCA AGGGCTTTGC CCTGGGCCGC GTCTGA
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Protein sequence | MSFKSNQEIL SSLTLYPHEP TLKNYITIFT DRSWYSGYIN SIIYVVQNMV ISVACALPAA YAFSRYRFLG DKHLFFWLLT NRMAPPAVFA LPFFQLYSAF DMIDTHIAVA LAHCLFNVPL AVWILEGFMS GIPKEIDETA YIDGYSFPRF FVKIFIPLIA SGIGVAAFFC FMFSWVELLI ARTLTTVDAK PIAAVMTRTV SASGVDWGLL AAAGVLTLIP GAVVIYFVRN YIAKGFALGR V
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