| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0094 |
|---|
| Symbol | glpD |
|---|
| ID | 7388276 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 90949 |
|---|
| End bp | 92499 |
|---|
| Gene Length | 1551 bp |
|---|
| Protein Length | 516 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 643649832 |
|---|
| Product | glycerol-3-phosphate dehydrogenase |
|---|
| Protein accession | YP_002548050 |
|---|
| Protein GI | 222147093 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0578] Glycerol-3-phosphate dehydrogenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCACTG TAATGCTGCA TTGCGAAAGG GAGAGAAACG TGTCCGGCGA TCCTGTCTTC
GACATATTCG TTATTGGTGG TGGCATTAAC GGCTGCGGCA TTGCCCGTGA TGCTGTCGGG
CGGGGCTATA CCGTTGCGCT GGCGGAAATG AATGATTTCG CGTCAGGCAC CTCTTCGGGT
GCCACCAAGC TCATTCACGG CGGCTTGCGC TATCTTGAAC ATTATGAATT TCGGCTGGTG
CGCGAAGCGC TGATGGAGCG TGAAGTACTC TGGGCCATGG CGCCACATAT CATCTGGCCG
ATGCGTTTCG TGCTGCCGTT CCACAAGGGC GGCATTCGTC CCGCCTGGCT GATCCGGCTG
GGCCTGTTTC TCTACGATCA TCTGGGTGGC CGTAAATTAC TGCCCGCCAC CAAAACATTG
AATATGCGCA AGGACAAGGC GGGCAAGCCG CTGAAGCCTC TGTTTACCCG CGCCTTTGAA
TATTCGGATG GCTGGGTCGA TGATGCCCGT TTCGTCGTGC TGAATGCCCG CGATGCTGCG
GATCGTGGCG CCACAATCCT CAGCCGCAAC CGCGTCATTG GCGCGCACCG GGATGGCGAT
CTCTGGATCA TCGAGGTCGA GGACCGCGCC AGCCGCGCAC GCAGCACCTA CAAGGCGCGG
ATGCTGGTCA ATGCAGGCGG CCCATGGGTC GATAGCGTGC TATCCAATGC GGTCGGCAGA
AACAATGTTC ACAACGTGCG GCTGGTGCAG GGCAGCCATA TCGTGGTAAA GAAGAAATTC
GATGATCCCC GTGCCTATTT CTTCCAAAAT CCGGACAACC GTATCATCTT CGCCATTCCC
TATGAGACGG ATTTCACCCT GATCGGCACG ACCGATCAGG ATTATCAAGG TGATCCGAAG
GATGTGAAGA TTTCCAGCGC CGAGATCTCC TATCTTTGCG ATGCCGCCAG CGAATATTTT
GCCGAGCCGG TCCGGCCTGA GGACATTGTC TGGTCCTATT CCGCCGTGCG GCCACTCTAC
GATGACGGTG CTTCCAAAGC GCAGGAGGCC ACCCGCGATT ACGTGCTGAA ACTGGAAACG
CCGGAAAAGG CCGCGCCGCT GCTTAACGTA TTCGGCGGCA AGCTGACCAC CTATCGGCGT
CTGGGTGAAC ATGCATTGGA AAAGATCGGC GAGGCCATCG GCGTCAAGGG CAAGCCCTGG
ACCGCGACAA GCCATTTGCC GGGCGGTGAT TTTCCGGCAA CCGGCTATCT GGCGGAAGTG
GAGAGGCTGA AAAAAGTATT TCCATTCCTG GAGGACCGTT GCGCGCGTCG GCTCGTGCGG
TGCTATGGCA CGTTTGCCAC GACGATCATC AATGGTGCCA AAAGCCTGGA GGGGCTGGGG
CACTATTTCG GGGGAACCCT GTATCAGGCA GAGGTGGACT GGCTGATTGC TCGGGAATGG
GCGGCAACAG CGGAGGATAT TCTCTGGCGC CGCACCAAGC AGGGCCTGTT CCTCAGTGTC
GAACAGGCAC AGGTGCTGGA AGACTATATC GAGGAGGCGC GGGCGGCCTG A
|
|---|
| Protein sequence | MRTVMLHCER ERNVSGDPVF DIFVIGGGIN GCGIARDAVG RGYTVALAEM NDFASGTSSG
ATKLIHGGLR YLEHYEFRLV REALMEREVL WAMAPHIIWP MRFVLPFHKG GIRPAWLIRL
GLFLYDHLGG RKLLPATKTL NMRKDKAGKP LKPLFTRAFE YSDGWVDDAR FVVLNARDAA
DRGATILSRN RVIGAHRDGD LWIIEVEDRA SRARSTYKAR MLVNAGGPWV DSVLSNAVGR
NNVHNVRLVQ GSHIVVKKKF DDPRAYFFQN PDNRIIFAIP YETDFTLIGT TDQDYQGDPK
DVKISSAEIS YLCDAASEYF AEPVRPEDIV WSYSAVRPLY DDGASKAQEA TRDYVLKLET
PEKAAPLLNV FGGKLTTYRR LGEHALEKIG EAIGVKGKPW TATSHLPGGD FPATGYLAEV
ERLKKVFPFL EDRCARRLVR CYGTFATTII NGAKSLEGLG HYFGGTLYQA EVDWLIAREW
AATAEDILWR RTKQGLFLSV EQAQVLEDYI EEARAA
|
|---|
| |