Gene Avi_0092 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_0092 
SymbolglpR 
ID7388275 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand
Start bp90102 
End bp90872 
Gene Length771 bp 
Protein Length256 aa 
Translation table11 
GC content58% 
IMG OID643649831 
Producttranscriptional regulator DeoR family 
Protein accessionYP_002548049 
Protein GI222147092 
COG category[G] Carbohydrate transport and metabolism
[K] Transcription 
COG ID[COG1349] Transcriptional regulators of sugar metabolism 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTTCTGT CTGCCCGGCA ATCCGACATT CTCGACATCG CCAAGGCGGA AGGCCGGGTG 
CAGGTGGATG ATCTGGCGGT TCGCTTTTCA GTGACGCCGC AAACCATTCG CAAGGATCTC
AACGATCTCT GCGAAACGCG CCGGCTGACG CGGGTCCATG GAGGGGCGAT CTTTCCAAGC
GGTGCCGAAA ACGTTCGCTA TGAAGCGCGC CGCTCAATGG CCGCGCCGGA AAAGCAGGCG
ATTGGCCGTG CTGCTGCCGA ATTGATCCCC AACAATGCAT CGCTGTTCAT CAATATCGGC
ACGACGACTG AGGCGGTGGG CGAAGCATTG CTTGATCATA AGGACCTGAT GGTCATTACC
AATAATATCA ACGTTGCCAA TCGCCTGCGG GTCTTTCCAG GCATTGAGGT GGTGATCGCT
GGTGGCGTCG TGCGTGGCTC CGATGGCGGT ATTGTCGGGG AAGCGGCGGT CGATTTCATC
CGCCAGTTCA AGGTGGATTA TGCGGTGATC GGCGCTTCGG CTATCGACCC TGACGGCGCA
TTGCTGGACT ATGACTATCG GGAGGTGAAG GTGGCGCAGG CGATTATCGC CAATGCCCGG
CACGTGATTC TAGTGGCTGA TTCCTCCAAA TTCGAGCGCG CCGCCCCGGT GCGGATCGGC
CATCTCAGCC AGGTTCACAC GTTCATCACT GACGTCTGCG ATATCGAAGG CCTTGCCGCT
ATTTGCCGTG AGCATGATGT GCGGTTGATC GAGGCATTCA GGGCCGCATA G
 
Protein sequence
MFLSARQSDI LDIAKAEGRV QVDDLAVRFS VTPQTIRKDL NDLCETRRLT RVHGGAIFPS 
GAENVRYEAR RSMAAPEKQA IGRAAAELIP NNASLFINIG TTTEAVGEAL LDHKDLMVIT
NNINVANRLR VFPGIEVVIA GGVVRGSDGG IVGEAAVDFI RQFKVDYAVI GASAIDPDGA
LLDYDYREVK VAQAIIANAR HVILVADSSK FERAAPVRIG HLSQVHTFIT DVCDIEGLAA
ICREHDVRLI EAFRAA