Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_0092 |
Symbol | glpR |
ID | 7388275 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 90102 |
End bp | 90872 |
Gene Length | 771 bp |
Protein Length | 256 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 643649831 |
Product | transcriptional regulator DeoR family |
Protein accession | YP_002548049 |
Protein GI | 222147092 |
COG category | [G] Carbohydrate transport and metabolism [K] Transcription |
COG ID | [COG1349] Transcriptional regulators of sugar metabolism |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTTCTGT CTGCCCGGCA ATCCGACATT CTCGACATCG CCAAGGCGGA AGGCCGGGTG CAGGTGGATG ATCTGGCGGT TCGCTTTTCA GTGACGCCGC AAACCATTCG CAAGGATCTC AACGATCTCT GCGAAACGCG CCGGCTGACG CGGGTCCATG GAGGGGCGAT CTTTCCAAGC GGTGCCGAAA ACGTTCGCTA TGAAGCGCGC CGCTCAATGG CCGCGCCGGA AAAGCAGGCG ATTGGCCGTG CTGCTGCCGA ATTGATCCCC AACAATGCAT CGCTGTTCAT CAATATCGGC ACGACGACTG AGGCGGTGGG CGAAGCATTG CTTGATCATA AGGACCTGAT GGTCATTACC AATAATATCA ACGTTGCCAA TCGCCTGCGG GTCTTTCCAG GCATTGAGGT GGTGATCGCT GGTGGCGTCG TGCGTGGCTC CGATGGCGGT ATTGTCGGGG AAGCGGCGGT CGATTTCATC CGCCAGTTCA AGGTGGATTA TGCGGTGATC GGCGCTTCGG CTATCGACCC TGACGGCGCA TTGCTGGACT ATGACTATCG GGAGGTGAAG GTGGCGCAGG CGATTATCGC CAATGCCCGG CACGTGATTC TAGTGGCTGA TTCCTCCAAA TTCGAGCGCG CCGCCCCGGT GCGGATCGGC CATCTCAGCC AGGTTCACAC GTTCATCACT GACGTCTGCG ATATCGAAGG CCTTGCCGCT ATTTGCCGTG AGCATGATGT GCGGTTGATC GAGGCATTCA GGGCCGCATA G
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Protein sequence | MFLSARQSDI LDIAKAEGRV QVDDLAVRFS VTPQTIRKDL NDLCETRRLT RVHGGAIFPS GAENVRYEAR RSMAAPEKQA IGRAAAELIP NNASLFINIG TTTEAVGEAL LDHKDLMVIT NNINVANRLR VFPGIEVVIA GGVVRGSDGG IVGEAAVDFI RQFKVDYAVI GASAIDPDGA LLDYDYREVK VAQAIIANAR HVILVADSSK FERAAPVRIG HLSQVHTFIT DVCDIEGLAA ICREHDVRLI EAFRAA
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