Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_0090 |
Symbol | |
ID | 7388273 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 88897 |
End bp | 89589 |
Gene Length | 693 bp |
Protein Length | 230 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 643649829 |
Product | anti sigma factor protein |
Protein accession | YP_002548047 |
Protein GI | 222147090 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3806] Anti-sigma factor |
TIGRFAM ID | [TIGR02451] anti-sigma factor, putative, ChrR family |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACTGTTC ACCATCATGT CAGCGATGAA TTGCTGCTCG ATTACGCCAA TGGCAGCCTT GCCGAAGGCT GGGGCATCGC CATTGCCACC CATCTCGCCT TGTGTCCCGA TTGTCGCCGG CGCCTTGCGA CCATGGAGGT TACTGCCGGG GCATTGTTGG AGGCCGAGAA ACCTGTTGAT GCCGATCTCA GCGTCGACCG CTCCTGGCAA GATATGCGAG CAAGGCTGAC TGCCTCCGGC GAACGGTCAA GGGAAAGCAC CGTCAGCCGG GTTGAGGCGT CGCCGGACGC CACCCGCCGT CAGCGCGATG CGATCCTGCC GGAACCGCTT CGCTCCTATC TGGGGCAGGA TCTTGATGGT TTGAAATGGA AGTCGCTTGG GCGCGGCGCC TATCACATTC CGATCAAGAC CCGCGATGGT GAAACCAGCG TGCGTCTGCT GCGCATTCCG GCCGGAAAGC CGGTGCCGGA ACATAGCCAT GGCGGTCGCG AACTGACACT GGTGCTGAAA GGCAGCTTCC ACGATGGACA GGGGCGGTTT GCCCGTGGCG ATCTGGAGGA AGCAGATGAG CAGTTGGAAC ATCAGCCTAT TGCTGAAGAC GGCGAAGATT GCATCTGCCT GGCTGTGACT GACGCCCCCC TGCGGTTTAA GAGCCGACTT GTCCGGCTAT TTCAACCGAT CCTCGGTATA TAG
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Protein sequence | MTVHHHVSDE LLLDYANGSL AEGWGIAIAT HLALCPDCRR RLATMEVTAG ALLEAEKPVD ADLSVDRSWQ DMRARLTASG ERSRESTVSR VEASPDATRR QRDAILPEPL RSYLGQDLDG LKWKSLGRGA YHIPIKTRDG ETSVRLLRIP AGKPVPEHSH GGRELTLVLK GSFHDGQGRF ARGDLEEADE QLEHQPIAED GEDCICLAVT DAPLRFKSRL VRLFQPILGI
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