Gene Avi_0090 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_0090 
Symbol 
ID7388273 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand
Start bp88897 
End bp89589 
Gene Length693 bp 
Protein Length230 aa 
Translation table11 
GC content60% 
IMG OID643649829 
Productanti sigma factor protein 
Protein accessionYP_002548047 
Protein GI222147090 
COG category[T] Signal transduction mechanisms 
COG ID[COG3806] Anti-sigma factor 
TIGRFAM ID[TIGR02451] anti-sigma factor, putative, ChrR family 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACTGTTC ACCATCATGT CAGCGATGAA TTGCTGCTCG ATTACGCCAA TGGCAGCCTT 
GCCGAAGGCT GGGGCATCGC CATTGCCACC CATCTCGCCT TGTGTCCCGA TTGTCGCCGG
CGCCTTGCGA CCATGGAGGT TACTGCCGGG GCATTGTTGG AGGCCGAGAA ACCTGTTGAT
GCCGATCTCA GCGTCGACCG CTCCTGGCAA GATATGCGAG CAAGGCTGAC TGCCTCCGGC
GAACGGTCAA GGGAAAGCAC CGTCAGCCGG GTTGAGGCGT CGCCGGACGC CACCCGCCGT
CAGCGCGATG CGATCCTGCC GGAACCGCTT CGCTCCTATC TGGGGCAGGA TCTTGATGGT
TTGAAATGGA AGTCGCTTGG GCGCGGCGCC TATCACATTC CGATCAAGAC CCGCGATGGT
GAAACCAGCG TGCGTCTGCT GCGCATTCCG GCCGGAAAGC CGGTGCCGGA ACATAGCCAT
GGCGGTCGCG AACTGACACT GGTGCTGAAA GGCAGCTTCC ACGATGGACA GGGGCGGTTT
GCCCGTGGCG ATCTGGAGGA AGCAGATGAG CAGTTGGAAC ATCAGCCTAT TGCTGAAGAC
GGCGAAGATT GCATCTGCCT GGCTGTGACT GACGCCCCCC TGCGGTTTAA GAGCCGACTT
GTCCGGCTAT TTCAACCGAT CCTCGGTATA TAG
 
Protein sequence
MTVHHHVSDE LLLDYANGSL AEGWGIAIAT HLALCPDCRR RLATMEVTAG ALLEAEKPVD 
ADLSVDRSWQ DMRARLTASG ERSRESTVSR VEASPDATRR QRDAILPEPL RSYLGQDLDG
LKWKSLGRGA YHIPIKTRDG ETSVRLLRIP AGKPVPEHSH GGRELTLVLK GSFHDGQGRF
ARGDLEEADE QLEHQPIAED GEDCICLAVT DAPLRFKSRL VRLFQPILGI