Gene Avi_0088 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_0088 
Symbol 
ID7388271 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand
Start bp86725 
End bp88032 
Gene Length1308 bp 
Protein Length435 aa 
Translation table11 
GC content58% 
IMG OID643649827 
Productamine oxidase flavin-containing 
Protein accessionYP_002548045 
Protein GI222147088 
COG category[R] General function prediction only 
COG ID[COG2907] Predicted NAD/FAD-binding protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGTCGGAT CGGGAATTTC CGGTCTATCC TGCGCATGGC TTTTGTCCAA GGGTTTCGAT 
GTAACGGTGT TTGAGGCTGA AAACCGCTTC GGTGGTCACG CCAATACCGT CAACGTCGCA
GGACCAAACG GACCTGTAGC TGTTGATACC GGGTTCATCG TCTATAACGA CCGTAATTAT
CCAAATCTCG TTGCCCTGTT CGATCATCTC GGCGTGCCAA ACCAAGCCTC CGACATGTCC
TTTGCAGCCT CGCTGGATGC GGGCCGTTTC GAATATTCCG GCTGCGGGCT GGCGGGTTTG
CTCGGTCAGC GCAGCAACGT GCTTCGCCCG CGCTTCTGGC GCATGGTAGC TGACATAATG
CGCTTTTACC GGGAAGCGCC TTTGCTGCTC GAGCGCCAAG ACCTGACAGC GGCAACGCTT
GGCGATTATC TCGATCTTGA AGCCTATAGC AATGCGTTTA TCGAGGATCA CCTCCTGCCG
ATGGGCGCTG CGATCTGGTC GACGACGGCT GCCGACATGC GGGCCTATCC GCTGAATGCC
TTTGTCCGGT TCTTCATCAA TCACGGTTTG GTCACGTTGA AAAACAGGCC GCAATGGCGC
ACGGTGACCG GGGGCAGTCG TGAATATGTC CTGCGCATAA AGCAGGCGAC CAAGGCCGAT
TTCCGGGCCA ACGATCCGGT CAAGGCCATT ATTCGCAGTG CGCTGGGGGT GAAGATCGTC
ACGCAAAGCG GCTATCAGGA TCGTTTCGAT CAGGTTGTTG TCGCCACCCA TGCGGATGAA
GCACTGGCGC TGCTGGACGA TGCGCAAGGG CTGGAACGGG CGCTGCTTGG CTGCTTCGAT
TACACCAAAA ATGTTGCCGT GCTGCATTCC GACACCCGAC TGATGCCAAA GCGCAAACAG
GTCTGGGCCA GCTGGAATTA CATCGGCGAA GAGCGCAAGG CTGGCGAAGG GCCGCTGTGC
GTAACCTATT GGATGAACCG GTTACAGGGC CTCGACGCCT CGCTGCCTCT GTTCGTAACG
CTCAATCCTT CGCGCGACAT CGACGAGTCC AAAGTGCATC AGGTCTTCAA CTACGCCCAT
CCGCTTTTCG ATGCCAAGGC CATTGCAGCC CAGCGCCAGC TCTGGCAATT GCAGGGACGC
AACAGGACGT GGTTCTGCGG TGCGCATTTT GGTAGCGGCT TCCATGAGGA CGGCCTTCAA
TCCGGTCTGG CTGTTGCCGA ACAACTGTCA GGAATTGCCC GTCCGTGGTC GGTGGAAAAC
CAATCAGGCC GGATTTTTGT CGAACCGATG CTGGCGGCAG CGCAATGA
 
Protein sequence
MVGSGISGLS CAWLLSKGFD VTVFEAENRF GGHANTVNVA GPNGPVAVDT GFIVYNDRNY 
PNLVALFDHL GVPNQASDMS FAASLDAGRF EYSGCGLAGL LGQRSNVLRP RFWRMVADIM
RFYREAPLLL ERQDLTAATL GDYLDLEAYS NAFIEDHLLP MGAAIWSTTA ADMRAYPLNA
FVRFFINHGL VTLKNRPQWR TVTGGSREYV LRIKQATKAD FRANDPVKAI IRSALGVKIV
TQSGYQDRFD QVVVATHADE ALALLDDAQG LERALLGCFD YTKNVAVLHS DTRLMPKRKQ
VWASWNYIGE ERKAGEGPLC VTYWMNRLQG LDASLPLFVT LNPSRDIDES KVHQVFNYAH
PLFDAKAIAA QRQLWQLQGR NRTWFCGAHF GSGFHEDGLQ SGLAVAEQLS GIARPWSVEN
QSGRIFVEPM LAAAQ