Gene Avi_0085 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_0085 
SymbolidnO 
ID7388268 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand
Start bp83874 
End bp84644 
Gene Length771 bp 
Protein Length256 aa 
Translation table11 
GC content58% 
IMG OID643649824 
Productgluconate 5-dehydrogenase 
Protein accessionYP_002548042 
Protein GI222147085 
COG category[R] General function prediction only 
COG ID[COG0300] Short-chain dehydrogenases of various substrate specificities 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGTCATGT CATCCTCGCC GCGCGCCAGG GTCGCCTGGA TCACCGGCGC CAGTTCCGGT 
ATTGGCCGCT CGCTTGCGCT GAAACTGGCG CGTGAAGGCT ATATCGTCGG GGTCAGCGCC
CGGCGGACCG AGGATCTGAT GGCGCTGGCG GCTGAAAATC CGGACCGTAT CCATGCTTTT
CCACTGGATA TTACCGATGG AAACGCTGTC AAACAGGTGG TGGGCGACAT CGAAGCCAAG
CTTGGCCCGA TCGATATGGC GGTGTTTTCC GCAGGCTCCT ATATCCGTGA AACGGCCGAG
CGTTTCGATG CCGAGCAATT GCGCCGGATG GTTGATCTCA ATCTGGTCGG CACCGGCCAT
TGCCTGGAAG CAGTGATTGC CGTGATGGTG GCGCGCGGCA AAGGCCGGAT CGGCCTTGTC
GGTTCGGTCT CCGGCTATAG CGGCCTGCCG GGCGGTGGCA TTTACGGAGC GACCAAATCA
GCGATGATCA CCCTGGCTGA GGCCTTGCGT CCTGGACTTC TCGAAAAGGG CGTGGTGATC
AGCATTATCA ATCCGGGCTT TGTCAAAACC CCGCTGACCG ACAAGAACGA CTTCCCCATG
CCCTTCCTGG TGACGGCTGA GCAAGCTGCT GATCACATTG AAAAAGGGAT GGAGGCCGGA
AAATTTGAAA TCGCCTTTCC CTGGCAAATG GTGTTGTCGC TCAAGCTTTT GAGACTTTTG
CCTTATCCGC TGTATTTCGC GTTGACGCGC AAGATGCTGC GGAAGACCTG A
 
Protein sequence
MVMSSSPRAR VAWITGASSG IGRSLALKLA REGYIVGVSA RRTEDLMALA AENPDRIHAF 
PLDITDGNAV KQVVGDIEAK LGPIDMAVFS AGSYIRETAE RFDAEQLRRM VDLNLVGTGH
CLEAVIAVMV ARGKGRIGLV GSVSGYSGLP GGGIYGATKS AMITLAEALR PGLLEKGVVI
SIINPGFVKT PLTDKNDFPM PFLVTAEQAA DHIEKGMEAG KFEIAFPWQM VLSLKLLRLL
PYPLYFALTR KMLRKT