Gene Avi_0076 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_0076 
SymboliolC 
ID7388259 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand
Start bp75639 
End bp77543 
Gene Length1905 bp 
Protein Length634 aa 
Translation table11 
GC content57% 
IMG OID643649815 
Productmyo-inositol catabolism IolC protein 
Protein accessionYP_002548033 
Protein GI222147076 
COG category[G] Carbohydrate transport and metabolism
[S] Function unknown 
COG ID[COG0524] Sugar kinases, ribokinase family
[COG3892] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGCCAAAAC TTGACCTGAT CACCATCGGC CGTTCGTCCG TTGATCTCTA CGGTGCGCAA 
GTGGGTGGCC GTTTGGAAGA TATGGCCTCC TTTAACAAAT ATATCGGCGG CTCCCCCACC
AATATTGCGG CTGGCACCGC CCGGCTGGGT TTGAAATCCG CGCTGATCAC CCGTGTGGGC
GATGAGCACA TGGGCCGCTT TATCCGCGAA CAGCTGGTGC GTGAAGGGGT TGATGTTCGC
GGCGTCAAGA CAGACCCCAA GCGGCTGACC GCGCTGGTTT TGCTCGGCAT TCGCGATGAG
CACCAGTTTC CGCTGATTTT CTACCGCGAA AACTGCGCCG ACATGGCGCT GTGCGAGGAT
GATATTGATC CCGCGTTTGT GGCCGAATCT GGCTGTGTTT GCGTCACGGG TACGCATCTA
TCCCATCCCA ATACCGAAGC TGCGGTGCTG AAGGCGCTGC GATTGGCGCG CGAAAATGGT
GCCAAAACCG CGCTGGATAT TGATTATCGG CCCAATCTCT GGGGCTTGGC GGGTCATGGC
GATGGCGAAA GCCGGTTTAT CGAATCGCAG GCCGTCACCA CAAAATTGCA ATCCACCCTG
CATTGGTTTG ATCTGATTGT TGGCACGGAA GAAGAATTCC ACATTGCCGG TGGCAGCACC
AACACGGTGG AAGCACTGCG GGCCGTGCGG AATGTTTCGA AGGCAACATT GGTTTGCAAG
CGCGGTGCCT TGGGCGCTGT GGTGTTTGAT GGTGATATTC CAGACAGTCT TGATGATGGC
CAGACCGGAG AAGGTTTCCC CATTGAGGTC TTCAACGTGC TGGGGGCTGG CGATGGCTTC
ATGTCTGGCC TTCTCAAAGG CTGGCTGACC GGCAAGGATT GGCCCACGGC CTTGAAATAT
GCCAATGCCT GCGGTGCCTT TGCGGTGTCG CGCCACGGCT GCACGCCTGC CTATCCAAGC
CTTGAAGAGC TGGATTACTT CTTCAAAACC GGCATTCGCA ACAAGGCTTT GCGCAAGGAT
GCGGCGCTGG AACAGGTGCA TTGGTCCACC AACCGCGATG GAGAATGGCC GCAGATGCGG
GTGTTTGCCT TCGATCACCG TATGCAGCTG GAAGCCATGT GTGATGAGGC TGGTGTTTCC
CATGCGCGGA TCGGCGCTTT CAAGCAACTC TGCCTGAAAG CAGCGCAGCA GGTGGCCAAT
GGCCAGCCCG GTTATGGCAT TCTCTGTGAT AGCCGTCTGG GTCGTGATGC GCTCTATCAG
GCCTCTGGGT CTGGCCTTTG GATTGGCCGT CCAGTGGAAT GGCCGGGCTC GCGTCCGCTG
ACATTGGAGC CGGAACTGGG CGAGGATTTT GGTGGTCTCA CCGAATGGCC GGTGGAAAAT
GTGGTGAAGG TTCTGTGCTT CTATCATCCC GATGATGATG CCGCCTTGAA GGAAAACCAA
GAAAATACGG TAAAACGTCT TTTCACGGCT GCGCGCCGTA ACCGACTTGA AATGCTGTTG
GAGATTATCC CTTCCAAGGT TGGCTCCACG GATGATGATA CGGCAGCTAC CATTATCCAG
CGCTTTTACG ACATTGGCGT CTACCCCGAT TGGTGGAAGC TGGAGCCGAT GAAAACGACG
GGTGCCTGGG CCAATGCGGT TGATGCCATT TCCCGCAACG ATCCCTATAC GCGGGGCATT
GTTGTGCTGG GCCTCGATGC GCCTGCCGCA GAGCTTGAGG AGAGCTTTAA GACGGCAGCC
AGCTTTGATC TGGTCAAGGG CTTTGCCGTT GGGCGCACCA TTTTTGGTGA TGCAGCCCGC
AAATGGTTAG CTGGCACACT ATCGGATGGT GATGCGATTG CTGACATGGT GGGTAAATAT
ACATCGCTGT GTCAGGTATG GGATCGGGCG CGTTCAAACG CTTGA
 
Protein sequence
MPKLDLITIG RSSVDLYGAQ VGGRLEDMAS FNKYIGGSPT NIAAGTARLG LKSALITRVG 
DEHMGRFIRE QLVREGVDVR GVKTDPKRLT ALVLLGIRDE HQFPLIFYRE NCADMALCED
DIDPAFVAES GCVCVTGTHL SHPNTEAAVL KALRLARENG AKTALDIDYR PNLWGLAGHG
DGESRFIESQ AVTTKLQSTL HWFDLIVGTE EEFHIAGGST NTVEALRAVR NVSKATLVCK
RGALGAVVFD GDIPDSLDDG QTGEGFPIEV FNVLGAGDGF MSGLLKGWLT GKDWPTALKY
ANACGAFAVS RHGCTPAYPS LEELDYFFKT GIRNKALRKD AALEQVHWST NRDGEWPQMR
VFAFDHRMQL EAMCDEAGVS HARIGAFKQL CLKAAQQVAN GQPGYGILCD SRLGRDALYQ
ASGSGLWIGR PVEWPGSRPL TLEPELGEDF GGLTEWPVEN VVKVLCFYHP DDDAALKENQ
ENTVKRLFTA ARRNRLEMLL EIIPSKVGST DDDTAATIIQ RFYDIGVYPD WWKLEPMKTT
GAWANAVDAI SRNDPYTRGI VVLGLDAPAA ELEESFKTAA SFDLVKGFAV GRTIFGDAAR
KWLAGTLSDG DAIADMVGKY TSLCQVWDRA RSNA