Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_0076 |
Symbol | iolC |
ID | 7388259 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 75639 |
End bp | 77543 |
Gene Length | 1905 bp |
Protein Length | 634 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 643649815 |
Product | myo-inositol catabolism IolC protein |
Protein accession | YP_002548033 |
Protein GI | 222147076 |
COG category | [G] Carbohydrate transport and metabolism [S] Function unknown |
COG ID | [COG0524] Sugar kinases, ribokinase family [COG3892] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | GTGCCAAAAC TTGACCTGAT CACCATCGGC CGTTCGTCCG TTGATCTCTA CGGTGCGCAA GTGGGTGGCC GTTTGGAAGA TATGGCCTCC TTTAACAAAT ATATCGGCGG CTCCCCCACC AATATTGCGG CTGGCACCGC CCGGCTGGGT TTGAAATCCG CGCTGATCAC CCGTGTGGGC GATGAGCACA TGGGCCGCTT TATCCGCGAA CAGCTGGTGC GTGAAGGGGT TGATGTTCGC GGCGTCAAGA CAGACCCCAA GCGGCTGACC GCGCTGGTTT TGCTCGGCAT TCGCGATGAG CACCAGTTTC CGCTGATTTT CTACCGCGAA AACTGCGCCG ACATGGCGCT GTGCGAGGAT GATATTGATC CCGCGTTTGT GGCCGAATCT GGCTGTGTTT GCGTCACGGG TACGCATCTA TCCCATCCCA ATACCGAAGC TGCGGTGCTG AAGGCGCTGC GATTGGCGCG CGAAAATGGT GCCAAAACCG CGCTGGATAT TGATTATCGG CCCAATCTCT GGGGCTTGGC GGGTCATGGC GATGGCGAAA GCCGGTTTAT CGAATCGCAG GCCGTCACCA CAAAATTGCA ATCCACCCTG CATTGGTTTG ATCTGATTGT TGGCACGGAA GAAGAATTCC ACATTGCCGG TGGCAGCACC AACACGGTGG AAGCACTGCG GGCCGTGCGG AATGTTTCGA AGGCAACATT GGTTTGCAAG CGCGGTGCCT TGGGCGCTGT GGTGTTTGAT GGTGATATTC CAGACAGTCT TGATGATGGC CAGACCGGAG AAGGTTTCCC CATTGAGGTC TTCAACGTGC TGGGGGCTGG CGATGGCTTC ATGTCTGGCC TTCTCAAAGG CTGGCTGACC GGCAAGGATT GGCCCACGGC CTTGAAATAT GCCAATGCCT GCGGTGCCTT TGCGGTGTCG CGCCACGGCT GCACGCCTGC CTATCCAAGC CTTGAAGAGC TGGATTACTT CTTCAAAACC GGCATTCGCA ACAAGGCTTT GCGCAAGGAT GCGGCGCTGG AACAGGTGCA TTGGTCCACC AACCGCGATG GAGAATGGCC GCAGATGCGG GTGTTTGCCT TCGATCACCG TATGCAGCTG GAAGCCATGT GTGATGAGGC TGGTGTTTCC CATGCGCGGA TCGGCGCTTT CAAGCAACTC TGCCTGAAAG CAGCGCAGCA GGTGGCCAAT GGCCAGCCCG GTTATGGCAT TCTCTGTGAT AGCCGTCTGG GTCGTGATGC GCTCTATCAG GCCTCTGGGT CTGGCCTTTG GATTGGCCGT CCAGTGGAAT GGCCGGGCTC GCGTCCGCTG ACATTGGAGC CGGAACTGGG CGAGGATTTT GGTGGTCTCA CCGAATGGCC GGTGGAAAAT GTGGTGAAGG TTCTGTGCTT CTATCATCCC GATGATGATG CCGCCTTGAA GGAAAACCAA GAAAATACGG TAAAACGTCT TTTCACGGCT GCGCGCCGTA ACCGACTTGA AATGCTGTTG GAGATTATCC CTTCCAAGGT TGGCTCCACG GATGATGATA CGGCAGCTAC CATTATCCAG CGCTTTTACG ACATTGGCGT CTACCCCGAT TGGTGGAAGC TGGAGCCGAT GAAAACGACG GGTGCCTGGG CCAATGCGGT TGATGCCATT TCCCGCAACG ATCCCTATAC GCGGGGCATT GTTGTGCTGG GCCTCGATGC GCCTGCCGCA GAGCTTGAGG AGAGCTTTAA GACGGCAGCC AGCTTTGATC TGGTCAAGGG CTTTGCCGTT GGGCGCACCA TTTTTGGTGA TGCAGCCCGC AAATGGTTAG CTGGCACACT ATCGGATGGT GATGCGATTG CTGACATGGT GGGTAAATAT ACATCGCTGT GTCAGGTATG GGATCGGGCG CGTTCAAACG CTTGA
|
Protein sequence | MPKLDLITIG RSSVDLYGAQ VGGRLEDMAS FNKYIGGSPT NIAAGTARLG LKSALITRVG DEHMGRFIRE QLVREGVDVR GVKTDPKRLT ALVLLGIRDE HQFPLIFYRE NCADMALCED DIDPAFVAES GCVCVTGTHL SHPNTEAAVL KALRLARENG AKTALDIDYR PNLWGLAGHG DGESRFIESQ AVTTKLQSTL HWFDLIVGTE EEFHIAGGST NTVEALRAVR NVSKATLVCK RGALGAVVFD GDIPDSLDDG QTGEGFPIEV FNVLGAGDGF MSGLLKGWLT GKDWPTALKY ANACGAFAVS RHGCTPAYPS LEELDYFFKT GIRNKALRKD AALEQVHWST NRDGEWPQMR VFAFDHRMQL EAMCDEAGVS HARIGAFKQL CLKAAQQVAN GQPGYGILCD SRLGRDALYQ ASGSGLWIGR PVEWPGSRPL TLEPELGEDF GGLTEWPVEN VVKVLCFYHP DDDAALKENQ ENTVKRLFTA ARRNRLEMLL EIIPSKVGST DDDTAATIIQ RFYDIGVYPD WWKLEPMKTT GAWANAVDAI SRNDPYTRGI VVLGLDAPAA ELEESFKTAA SFDLVKGFAV GRTIFGDAAR KWLAGTLSDG DAIADMVGKY TSLCQVWDRA RSNA
|
| |