| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0071 |
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| Symbol | dapA |
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| ID | 7389061 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 70056 |
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| End bp | 71003 |
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| Gene Length | 948 bp |
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| Protein Length | 315 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643649810 |
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| Product | dihydrodipicolinate synthase |
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| Protein accession | YP_002548028 |
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| Protein GI | 222147071 |
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| COG category | [E] Amino acid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0329] Dihydrodipicolinate synthase/N-acetylneuraminate lyase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAACCAA TGGATATGAG AGGGCTCAGC CCGGCACCAG TCACTGCTTT CACCCGCGAT
GGTGAGGTCG ATTATGCTGC CAATACCCGC ATTGCCAAAT GGCTCGCAGG AATGGACGGC
GTGAAAAGCC TTGTCATTCT TGGTCATGCT GGCGAAGGTA CTTTTCTGAC GGAAGAAGAG
CGATTGAAGC TCATCCGCAC GTATGTAGAG GCGGTTGATG GTCGAATTCC GATCATTGCT
GGTATCACCG GTGAAGGCAC CAGGGTCGCG GCGGAAGAAG CCAAGAAGTG CAAGGCAGCC
GGTGCAACGG GCGCACTCGT TTATCCCAAC CACGGCTGGC TCCGTTTCGG CTTCCAGAAG
GGCGCCCCGC AGGATCGCTA CAAGGCGATC TGGCAGGAAT CAGGCCTACA ATGCATTCTC
TTCCAGTATC CGGATGCGAC CAAAGCGTCC TACGACCTGG ACACCCAGCT TGCCATCGCG
ACCCAGGATG GCGTCGTTGC CACCAAAAAC GGTGTGCGCA ACATGAAGCG CTGGTATGTT
GAGATCCCTG AGCTCAAAAA GGCCAATCCC AACCTTCAGA TCCTGAGCTG CCACGACGAA
TGGTTGCTGC CGACCATGTT CGATGTTGAC GGCCTGCTCG TTGGTTATGG AAATATCGCC
CCAGAACTCC TGATCGACCT GATCAAAGCG GGCAAGGCGC AGAACTATCC CGAAGCACGC
AAGCTTTTCG AGCAACTCCT TCCGGTTACA CGAGCCGTGT ACCATCGAGG TTCTCACATG
GAGGGCACCG TGGCCCTTAA GCTCGGTCTC GTCCATCGTG GTGTTCTGGA GCACGCCACT
ATCCGCGAGC CGCTGAAGAA TCTCGGCGAG AAGGCCGAAG CTGAAATCTT TGCGGCCTTC
GATGCTGCCG GTATTGGCCG CGTTGAGCAA CTGATGGCGG CTGAATAG
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| Protein sequence | MQPMDMRGLS PAPVTAFTRD GEVDYAANTR IAKWLAGMDG VKSLVILGHA GEGTFLTEEE
RLKLIRTYVE AVDGRIPIIA GITGEGTRVA AEEAKKCKAA GATGALVYPN HGWLRFGFQK
GAPQDRYKAI WQESGLQCIL FQYPDATKAS YDLDTQLAIA TQDGVVATKN GVRNMKRWYV
EIPELKKANP NLQILSCHDE WLLPTMFDVD GLLVGYGNIA PELLIDLIKA GKAQNYPEAR
KLFEQLLPVT RAVYHRGSHM EGTVALKLGL VHRGVLEHAT IREPLKNLGE KAEAEIFAAF
DAAGIGRVEQ LMAAE
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