Gene Avi_0067 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_0067 
SymbolhrpB 
ID7389057 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand
Start bp57585 
End bp60047 
Gene Length2463 bp 
Protein Length820 aa 
Translation table11 
GC content63% 
IMG OID643649801 
ProductDEAD box-like helicase 
Protein accessionYP_002548025 
Protein GI222147068 
COG category[L] Replication, recombination and repair 
COG ID[COG1643] HrpA-like helicases 
TIGRFAM ID[TIGR01970] ATP-dependent helicase HrpB 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0419076 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCATTCT CTCTTCCTCC TTATCCTGTC AGCGAAATCC TGCCTCCTTT GGCCAAGGCA 
TTGCGAGAGG GAAACCGTGC TGTGCTTTCC GCCCCTCCAG GAGCGGGCAA GACGACACTT
GTTCCACTTT ATCTGCTCGA TCAGCCATGG CGCGGCGATA ACCGCATCAT TCTGCTGGAG
CCAAGGCGGC TGGCCGCGCG TGCTGCGGCC TCCCGCATGG CCTCCCTGAT CGGCGAGACT
GTGGGTGAAA CGGTGGGCTA CCGAATGCGG CTCGATAACC GCATCTCTGC CAAGACGCGG
ATTGAAGTGG TCACGGAGGG CGTATTTGCC CGGATGATTC TTGAGGATCC CGAACTCTCC
GGCATCGCCG CCGTGCTGTT TGATGAATTT CACGAGCGGT CACTGGATGC GGATTTTGGT
CTCGCGCTGG CGCTGGATTG CCAATCCGCG CTGCGCGATG ATTTGCGGCT GATTGTCATG
TCGGCGACGC TGGATGTGCA GCGGATGGCA GGTCTGATGC AGGACCCGCC AGTGCTGGAA
AGTGCGGGGC GCAGCTTTCC CATCGATATC CGCCACCGCG ACCGGCCCGG CACTGAGCGG
ATTGAAGACA GCGTCACCAG TGCCATTCTC GATGCCCATG CCCATGAAAG CGGGTCGATC
CTTGCCTTTC TGCCCGGTCA GGCCGAAATC CGCCGCGTGG CGGAGCGGCT GGAGGGCCGG
TTGCCAGCGG CAACTTTGAT TGCACCGCTT TACGGCAATC TTTCACAAGC CGAGCAAGAC
CAGGCCATCA AGCCCACCAC TCCCGGCACC CGCAAAGTGG TGCTGGCCAC ATCGATTGCC
GAAACCTCGA TCACCATCGA CGGGGTGCGG ATCGTCATCG ACAGCGGGCT GCAACGCCTG
CCGGTCTACG AACCCTCGAC GGGTATCACG CGACTGGAAA CCACCCGTGT TTCGCGCGCT
TCCGCCGACC AGCGGGCCGG ACGTGCCGGT CGAACCGAGC CGGGTATCGC CATCCGGCTG
TGGCATGCCG GTCAAACGGC AGCGATGCCA GCCTTTACCC CGCCGGAAAT TCTCGCCAGT
GACCTGTCAG GTCTGGTGAT GGACATGGCC CATTGGGGCG TGACCGATGC CTCTGCCTTA
TCCTTTATCG ATCAGCCCCC CGCCGCAGCC TTGAAGGAGG CGCGAAACCT GCTGGTGGCT
CTTAGCGCAC TGGATGATCA GGGACACTTG ACGGCCAAAG GCAAGATCAT GCGCGGCCTT
GGCCTGCCGC CGAGGCTTGC CGCTATGGTA ATTGCCGCCG CCGAACAGGG ACAGGCTAAA
ACAGCCAGCG ACATCGCTGT CCTGCTGACG GAACAAGGAT TGGGCGGAAC GGATATCGAC
CTGGAAGAAC GCCTGCGCCG ATTTCGGTCG GACCGCAGCG AGCGGGCCAG TGCAGCGCGC
AAGCTGGCAG AGCGGCTGAC GAAAGACCTG CCGAAACGTC AGGCTGCTGC CACCCCGGCG
CTGGCCGGAG TGCTGCTTTT GCATGCCTAT CCAGACCGGA TCGCGCTGAA ACGGGGCGCA
CCGGGGCGAT ATGTGATGGC GAACGGGCGC GGCGCGGAAC TGGCGCAAAC CGAACGGCTG
GCGGCAAGCG ACATGCTTGT CATTGCCGAT CTGACCGGGC GGGCGGCGCA AGGGCGAATC
CTGAGCGCAG CGGAAATCCG CCTTTCCGAT ATAGAAGAGA GCCTGCCGGC AGCAATCATT
CAGGGCGATG AGAGCTTTTT CGACCCGCCA AGCGGCCAGG TCCGCGCTCG GCGCGTCAAG
CGGATCGGTG CGATCATTCT GGAGGAGACA CCGCTAGGGC GGCCCAGTGG CGAAGGTGCC
ACCAAAGCGC TGGCTGAAGG GTTGCGGCAA TTGGGTCTCG AACGCCTGGA TTTCAGCAAG
AATGCCGAGC AATTGCGCCA GCGCATCGGT TTTCTGCATC GCACGCTCGG AACACCCTGG
CCAGACATGA GTGACGAGGC CTTGCTGGAT CGGCTTGAGG ACTGGTTCAT TCCCTTCCAG
ACCGGTGTGC GCAGCCTTGC CGATATTTCC ATGGGCGGAA TCATCGATGG GCTGAAGGCG
CTGGTGCCTT ACGAGGCGCA GCGTGATCTG GACCAGATGG CGCCGACCCA TTTTACCGCG
CCGACCGGCA TGAGCCATCC GATCCAATAT GACGGCGACG AGCCGAAGCT GACGATCCGC
GTTCAGGAAT TGTTTGGCCT TAAAAACCAT CCGGCCATTG GCGGCGGACG GTTGCCGCTG
CTGCTGGAAC TGACGTCGCC AGCGCATCGG CCAATCCAGA CGACCCGCGA CCTGCCTGGT
TTCTGGACGG GATCATGGAG CGACGTGCGC GCCGACATGC GAGGACGCTA TCCCCGCCAT
CCCTGGCCCG ACGACCCTGC CGCTGCTGCC CCCACGACAC GGGCCAAACC GCGTGGTACA
TAG
 
Protein sequence
MAFSLPPYPV SEILPPLAKA LREGNRAVLS APPGAGKTTL VPLYLLDQPW RGDNRIILLE 
PRRLAARAAA SRMASLIGET VGETVGYRMR LDNRISAKTR IEVVTEGVFA RMILEDPELS
GIAAVLFDEF HERSLDADFG LALALDCQSA LRDDLRLIVM SATLDVQRMA GLMQDPPVLE
SAGRSFPIDI RHRDRPGTER IEDSVTSAIL DAHAHESGSI LAFLPGQAEI RRVAERLEGR
LPAATLIAPL YGNLSQAEQD QAIKPTTPGT RKVVLATSIA ETSITIDGVR IVIDSGLQRL
PVYEPSTGIT RLETTRVSRA SADQRAGRAG RTEPGIAIRL WHAGQTAAMP AFTPPEILAS
DLSGLVMDMA HWGVTDASAL SFIDQPPAAA LKEARNLLVA LSALDDQGHL TAKGKIMRGL
GLPPRLAAMV IAAAEQGQAK TASDIAVLLT EQGLGGTDID LEERLRRFRS DRSERASAAR
KLAERLTKDL PKRQAAATPA LAGVLLLHAY PDRIALKRGA PGRYVMANGR GAELAQTERL
AASDMLVIAD LTGRAAQGRI LSAAEIRLSD IEESLPAAII QGDESFFDPP SGQVRARRVK
RIGAIILEET PLGRPSGEGA TKALAEGLRQ LGLERLDFSK NAEQLRQRIG FLHRTLGTPW
PDMSDEALLD RLEDWFIPFQ TGVRSLADIS MGGIIDGLKA LVPYEAQRDL DQMAPTHFTA
PTGMSHPIQY DGDEPKLTIR VQELFGLKNH PAIGGGRLPL LLELTSPAHR PIQTTRDLPG
FWTGSWSDVR ADMRGRYPRH PWPDDPAAAA PTTRAKPRGT