Gene Avi_0057 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_0057 
SymbolglcB 
ID7389052 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand
Start bp51760 
End bp53940 
Gene Length2181 bp 
Protein Length726 aa 
Translation table11 
GC content59% 
IMG OID643649796 
Productmalate synthase G 
Protein accessionYP_002548020 
Protein GI222147063 
COG category[C] Energy production and conversion 
COG ID[COG2225] Malate synthase 
TIGRFAM ID[TIGR01345] malate synthase G 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCGCGTG TCGAACAGTT TGGTCTGGCT ATCGAGCAGG ATCTCTATGA TTTTCTGGTG 
AGCGAGGCCT TGCCGGGGAC AGGCGTGGAG CCAGAGGCCT TCTTCCAGCA TTTCTCCAGC
CTCGTGCATG AGCTTGCGCC GAAGAATCGC GCCCTGCTGG CCAAGCGCGA CGCCTTTCAA
GCGCAGCTGG ACAACTGGTA CAAGCAAAAC GGCGCCCCCT CGGATCTTGC GGCTTACGAA
GCTTTCCTGC GCGATATCGG CTATCTCCTG CCGGAAGGGC CGGATTTTTC CGTGACGACC
AGCAATGTCG ACGCGGAAAT CGCTTCGATT GCCGGGCCGC AGCTTGTCGT GCCTGTGATG
AATGCCCGTT ATGCCCTGAA TGCTGCCAAT GCGCGCTGGG GTTCGCTCTA CGACGCGCTC
TACGGAACGG ATGCGATCTC CGAGGCCGAC GGTGCCGAAA AGGGCAGGGG GTATAATCCC
AAACGTGGCG AAAAGGTTAT TGCCTGGGCG CGGGCTTTCC TCGATCAGTC CGTGCCTCTG
GCGGGTGGCC GCTGGGCGGA TGTGGCGGGC CTTGCGCTGA CTGATGGCTA TCTTGATGTA
ACGCTGGCCT CCGGCGACAA GACCGGGTTG ATGGACCCCT CGCAACTGGC GGGGACCTTC
AGCGAGGATG GCAGCGTGAC CTCCTATCTT CTGCGCCGCA ACGGTCTGCA TGTGGAAATC
TGCATTGACG CCAAAGGTGC GATTGGTGCT GCCGATAAGG CGAATATCAA TGATATCAGA
ATGGAATCGG CGATTACCGC TATCATGGAC TGCGAGGATT CGGTTGCCGC CGTCGATGCT
GAGGACAAGA TCCTGGCCTA TTCCAACTGG CTCGGCTTGA TGAAGGGCGA TCTGGAGGAA
GTGGTTACCA AGGGCGATCA CGTCTTTACC CGTACCCTCA ATCCTGATCT CGAATTCACC
GATCCGCAGG GCAAGCCCTT TACCGTCGCC AGCCGGTCAC TGATGCTGAT TCGCAATGTC
GGGCATCTGA TGACCAATCC GGCCATTCTG GATCGTGACG GTGCCGAGGT GCCGGAAGGC
ATTATGGATG CGATGGTGAC CGCGGTGATC GCGCTGCATG ATATCGGACC GAATGGACGG
CGGAAGAATT CGCGCCGGGG CTCAATGTAT GTGGTGAAGC CGAAAATGCA TGGGCCGGAA
GAAGTGGCTT TTGCCGTCGA AATTTTTACC CGTGTCGAAC AGGCGCTGGG CATGGAACCC
AATACGATCA AGATGGGCAT TATGGATGAG GAGCGCCGTA CCACGGTTAA CCTCAAGGAA
TGCATCCGCG CCGCCAAGGA CCGGGTGGTG TTCATCAATA CCGGCTTCCT CGACCGCACT
GGCGACGAAA TCCATACCTC GATGGAAGCC GGGCCGATGA TTCGCAAGGG TGACATGAAA
CAGGCCGCCT GGATTGCGGC TTATGAAAAC TGGAACGTCG ATATCGGTCT GCAATGCGGC
CTGTCCGGCC ATGCCCAGAT TGGCAAGGGC ATGTGGGCCA TGCCGGACCT GATGGCGGCG
ATGTTGGAAC AGAAGATCGC TCATCCGAAA GCCGGGGCCA ATACTGCCTG GGTCCCATCA
CCAACGGCAG CTACGCTGCA TGCCACCCAT TATCATCAGG TGGATGTCGC GGGCGTCCAG
GCCGGATTGA AGAGCCGGAC GCGGGCCAAG CTCTCCGATA TCTTGTCGGT GCCGGTGGCC
TCCCGCCCCA ATTGGACGCC GGAAGAAATC CAGCGCGAGC TGGATAACAA TGCCCAGGGC
ATTCTGGGCT ATGTGGTCCG CTGGATCGAC CAGGGCATCG GCTGCTCGAA AGTGCCTGAC
ATTAACAATG TCGGGCTGAT GGAAGACCGG GCGACCCTGC GCATCTCCGC CCAACACATG
GCCAACTGGC TGCATCATGG CGTTGTCACC GAGGCGCAGG TGATCGAAAC ACTCAAACGG
ATGGCAGCCA TCGTCGATCA GCAGAATGCG GGTGATTCGG CCTATCGCCC GATGGCTGCC
GATTTCGACA CCTCCATCGC TTTCCAGGCG GCACTCGATC TGGTGTTGAA GGGCAGGGAG
CAGCCGAACG GTTATACCGA ACCGGTCCTG CACCGCCGCC GACTTGAGTT GAAGGCCACA
GCAATTCCAG CAAAAGTGTG A
 
Protein sequence
MARVEQFGLA IEQDLYDFLV SEALPGTGVE PEAFFQHFSS LVHELAPKNR ALLAKRDAFQ 
AQLDNWYKQN GAPSDLAAYE AFLRDIGYLL PEGPDFSVTT SNVDAEIASI AGPQLVVPVM
NARYALNAAN ARWGSLYDAL YGTDAISEAD GAEKGRGYNP KRGEKVIAWA RAFLDQSVPL
AGGRWADVAG LALTDGYLDV TLASGDKTGL MDPSQLAGTF SEDGSVTSYL LRRNGLHVEI
CIDAKGAIGA ADKANINDIR MESAITAIMD CEDSVAAVDA EDKILAYSNW LGLMKGDLEE
VVTKGDHVFT RTLNPDLEFT DPQGKPFTVA SRSLMLIRNV GHLMTNPAIL DRDGAEVPEG
IMDAMVTAVI ALHDIGPNGR RKNSRRGSMY VVKPKMHGPE EVAFAVEIFT RVEQALGMEP
NTIKMGIMDE ERRTTVNLKE CIRAAKDRVV FINTGFLDRT GDEIHTSMEA GPMIRKGDMK
QAAWIAAYEN WNVDIGLQCG LSGHAQIGKG MWAMPDLMAA MLEQKIAHPK AGANTAWVPS
PTAATLHATH YHQVDVAGVQ AGLKSRTRAK LSDILSVPVA SRPNWTPEEI QRELDNNAQG
ILGYVVRWID QGIGCSKVPD INNVGLMEDR ATLRISAQHM ANWLHHGVVT EAQVIETLKR
MAAIVDQQNA GDSAYRPMAA DFDTSIAFQA ALDLVLKGRE QPNGYTEPVL HRRRLELKAT
AIPAKV