Gene Avi_0056 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_0056 
SymboluvrD 
ID7389051 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand
Start bp47864 
End bp51412 
Gene Length3549 bp 
Protein Length1182 aa 
Translation table11 
GC content62% 
IMG OID643649795 
ProductATP-dependant DNA helicase 
Protein accessionYP_002548019 
Protein GI222147062 
COG category[L] Replication, recombination and repair 
COG ID[COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) 
TIGRFAM ID[TIGR02784] double-strand break repair helicase AddA, alphaproteobacterial type 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACTGATC CGGACATGCT GCGCGATGGC GATGACCCCA TTGACTGGAC CACACGACAG 
CAATCGCTGG CCTCCGACCC GGCCCGTTCC GCCTGGGTCT CGGCCAATGC CGGGTCCGGC
AAGACCCATG TGCTGACACA GCGTGTGATT CGCCTGCTGC TGGCGGGCGC GCGGCCCTCT
TCTATTCTTT GCCTGACCTA TACCAAGGCG GCGGCCTCTG AAATGTCGAA CCGGGTGTTC
GACCGGCTTG CCGAATGGGC GACCTTGTCC GACGAGGAGC TTTCCCGCCG GATCGAAACC
ATCGAGCGCC GACCGCCGGA TCGCATGAAG ATTGCCGAGG CGCGGCGGCT GTTTGCCCGC
GCCCTGGAAA CACCGGGCGG CTTGAAAATC CAGACCATCC ATGCCTTTTG CGAGGCGCTG
CTGCACCAAT TTCCGCTGGA AGCCAATGTG GCCGGGCATT TTTCGGTGCT GGATGACCGC
GCCGCCTCGG TGCTTTTGGC CGATGCCCGC CGTTCGTTGT TGACGGCGAC CGCTGCCGAA
GACGATGCAA ATCTCGCCGA AGCCTTTGCC GAAGTGTTGA GCCTTGGCGA TGAATTCGGG
CTGGAAAACC TGCTGTCGGA CATCGTTTCC AACCGCCATG CGGTACGCGG CTTTCTGGCG
GTAGCCCGCC GAAAGGGCGG CGTGGAGAGT GCTTTGCGCA ATGCCTTGGG CCTTCAGCCT
GACGAAACCG AGATATCGCT GGCCGAAGCC TATTGGCCGC TTCCCACCCT CGCAGGTCCG
CAGCTTTCCA CCTATATCGA TCTGGCGCTC ACCAAGGGCG GTTCCCTTGT GCAGGGCGTC
GCCCTGACGC TGGAGCGCGC CGTGCGCCAG CCTGACGCGC TGATCCGGGC GCAATTGCTG
GAAGAGGCTT TTTATACCGG CTCCGATAAA CCAAAAGCCG ACCGGTCGCT GATTGCCGCC
GCCATGAACA AGGCGGCCCC TCATCTGTCG GATGCGATTT TTGCGGCCCG CGACCATGTG
GTGGCCTGCC GTGAGCGCCT GCGGCTGTTT CGGCTGTTCA AGGCAACACG GGCGGCGCTA
ACGCTGGCCG AGCGGCTGGA CCATGATTAT GAAGAGCTGA AAAAGCGCAG CAGCCAGCTG
GATTTCGAGG ATCTGATTGC CCGCACCGCC GAGCTTTTGA CCCGCAGCAC GGTCGGCCCC
TGGGTGCATT ACAAGCTGGA TCAGGGCATC GACCATATTC TGGTCGATGA GGCGCAGGAT
ACCAGCCCGG TACAATGGTC GGTGATCCGC TCGCTGCGCG AAGATTTTTT CTCCGGCCAG
AGCGCCCGTC CGGTCCGCCG CACCTTCTTT GCGGTTGGCG ATGAGAAGCA ATCGATCTAC
TCCTTCCAAG GTGCAAAGCC GGAACGGTTT TCGCAGGAAG CCCGCGAGAC CGAGCAGGAA
GTGGCGCGTG GCAGCGAAAG CTTCAGCGCG GTGCGCCTGC CGCTGTCCTT CCGCTCCACC
AATGCGGTGT TGTCAGCCGT CGATCAGGTG TTTTCGGTCA CCGAGAACGC CCGCGGCCTT
TCGGCTGTTG CGGAACCAGT GGTGCATATG TCGAGCCGCA TCGGCCATCC CGGTGCGGTT
GAAGTCTGGG AGATGATCGC GCCGGAAGGC AGCGAAAGTG AAGAGGATTG GACCGCACCC
TTTGATGCAA CGCCGGAAAA TGCGCCCTCG GCCATGCTGG CGCGGCGGAT CGCCCAGCGG
ATCGAGATCA TGCTGGCCCG CGAGACCATC GTGGAAAAGG GGGTGGAGCG GTCCATAGAA
GCAGGCGACA TCCTCATTCT GGTGCGCAAA CGCGGCGCTT TCGTCAATGC GCTGACACGG
GCCTTGAAGC GGCGCAGCAA TATTCCGGTG GCCGGGGCCG ACCGGTTGCG GCTGACAGGC
CATATCGCCG TGCAGGATCT GCTGGCACTG GGGCGATTCG TTCTTTTCAC CGCCGATGAC
CTGTCGCTGG CGGCGCTGCT GAAGAGCCCG TTGTTCAACC TGAGCGAAGA CGATGTGTTT
GAAGTGGCAG CACGGCGCGG CGAGATCTCG GTGTTTGCCG AGATTGCCCG GCTGGCGGAG
GCTGGGTCGG AAAAATGGCA GGCGGCCCTT GCCCGTCTGC ACCGCTATGT GGCCTTGGCG
CGGGATCTTC TGCCCCATGA TTTCTATGGT CGGGTGCTTG GTCCCCTGGG GGGACGACGC
GACTTTCTGG CTCGGCTTGG CAGCGAGGTC AGCGATATCA TCGATGAATT CCTGACCTTT
ACTCTTTCCC ATGAACAGGC GGGCCTGCCG GGCCTGCAAT CCTTCATCAC CACGCTGGAG
CAGGAAGCCC CGGAAGTGAA GCGCGAACAG GACAAGGAGC GCAGCGAGGT GCGCATCATG
ACCGTTCATG CCTCCAAGGG GCTGGAAGCA CCGATTGTCT TTCTGGTCGA TGATGGCTCC
AAAGCCTTCA ACCATACACA TCTGCCAAAA TTCCGGATGA TCGAGACCGG AGCGCAGCCC
CAGGAATGCC CGGTCTGGGT GCCGGTGAAA GCGGTTGATA ATCCTCTGAC CGCTGAGGAC
GTGGCAAAGC GAAAACAGGC CATCGAGGAG GAATATCGAC GCCTGCTCTA TGTCGGCATG
ACGCGGGCTG CCGACCGGCT GGTGGTCTGC GGTTATCGCG GCAAGCAGGT GCAAACTGAA
ATCTGGCACC AGATGGTCTG GTCTGCGCTG GAATTGGACA CGGAGCGGTG CCGTCAGCAG
GGCTTTGGCG GGCCAGAGGG GGACTGGACC GGGCTGCTCT GGGAAAATGC CGTCGTTCCG
GGCCGATTCG AACGCCAGGA AAAACGCCAG GAAAAACGGG AGCTGGAAAC CTTGCCGGAG
GCGCTGCTGC GGCCAGCGCC GCCGCCGCCA CGCTTGCCAC GGCCTTTAAG TCCCTCCGGG
GCCGGGATCG AGGTGAATGA CGAGGACGGC GACATGCTGC TGCGCTCGCC GTTGTTCAGC
AAAGGGGAGG ATGCCGGGTT GGCGCTGCAA AAGGGCCGGT TGGTGCACCG GATGCTGCAA
ATGTTGCCGG GCCTGCCCGC CGATGAACGC AAACCCGCCG CCCGCCGCTA TGGCGAGCGC
GCCGCCCGGT TCTGGCCCGC CCATGAGCGC GACCGCTTGG TGGAGAGTGT TTTGGCTATC
CTTGACCATC CGGCCTTGAG CGAGGTGTTT TCCAGCCATG CGCAGACGGA ATTTTCGCTG
ATGGGAACTA TCCGGCTTGG CGCAGAACAG CGCGCCGTCT CGGCGCGAGT GGACCGAATG
GCGGTTACGA ACGAGAAAGT GATTCTGCTG GATTACAAGA CCAACCGGCA GCCGCCGCGT
CAGGAAAGTG AAGTGCCACT GTCCCATTCG GCCCAGCTTG CCATCTACCG CGAATTGCTG
AAGCCGCTCT ATCCGGGACG GGTGATCGAG TGCCTGCTGG TCTATACCGA AGGGCCGCAT
GTGGTGGCGC TGACGGAGGC GGGTTTGCAC GGCGCATTAC AAGAGCTTCA GACCATTCAA
AACACCTAG
 
Protein sequence
MTDPDMLRDG DDPIDWTTRQ QSLASDPARS AWVSANAGSG KTHVLTQRVI RLLLAGARPS 
SILCLTYTKA AASEMSNRVF DRLAEWATLS DEELSRRIET IERRPPDRMK IAEARRLFAR
ALETPGGLKI QTIHAFCEAL LHQFPLEANV AGHFSVLDDR AASVLLADAR RSLLTATAAE
DDANLAEAFA EVLSLGDEFG LENLLSDIVS NRHAVRGFLA VARRKGGVES ALRNALGLQP
DETEISLAEA YWPLPTLAGP QLSTYIDLAL TKGGSLVQGV ALTLERAVRQ PDALIRAQLL
EEAFYTGSDK PKADRSLIAA AMNKAAPHLS DAIFAARDHV VACRERLRLF RLFKATRAAL
TLAERLDHDY EELKKRSSQL DFEDLIARTA ELLTRSTVGP WVHYKLDQGI DHILVDEAQD
TSPVQWSVIR SLREDFFSGQ SARPVRRTFF AVGDEKQSIY SFQGAKPERF SQEARETEQE
VARGSESFSA VRLPLSFRST NAVLSAVDQV FSVTENARGL SAVAEPVVHM SSRIGHPGAV
EVWEMIAPEG SESEEDWTAP FDATPENAPS AMLARRIAQR IEIMLARETI VEKGVERSIE
AGDILILVRK RGAFVNALTR ALKRRSNIPV AGADRLRLTG HIAVQDLLAL GRFVLFTADD
LSLAALLKSP LFNLSEDDVF EVAARRGEIS VFAEIARLAE AGSEKWQAAL ARLHRYVALA
RDLLPHDFYG RVLGPLGGRR DFLARLGSEV SDIIDEFLTF TLSHEQAGLP GLQSFITTLE
QEAPEVKREQ DKERSEVRIM TVHASKGLEA PIVFLVDDGS KAFNHTHLPK FRMIETGAQP
QECPVWVPVK AVDNPLTAED VAKRKQAIEE EYRRLLYVGM TRAADRLVVC GYRGKQVQTE
IWHQMVWSAL ELDTERCRQQ GFGGPEGDWT GLLWENAVVP GRFERQEKRQ EKRELETLPE
ALLRPAPPPP RLPRPLSPSG AGIEVNDEDG DMLLRSPLFS KGEDAGLALQ KGRLVHRMLQ
MLPGLPADER KPAARRYGER AARFWPAHER DRLVESVLAI LDHPALSEVF SSHAQTEFSL
MGTIRLGAEQ RAVSARVDRM AVTNEKVILL DYKTNRQPPR QESEVPLSHS AQLAIYRELL
KPLYPGRVIE CLLVYTEGPH VVALTEAGLH GALQELQTIQ NT