Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_0056 |
Symbol | uvrD |
ID | 7389051 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 47864 |
End bp | 51412 |
Gene Length | 3549 bp |
Protein Length | 1182 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 643649795 |
Product | ATP-dependant DNA helicase |
Protein accession | YP_002548019 |
Protein GI | 222147062 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
TIGRFAM ID | [TIGR02784] double-strand break repair helicase AddA, alphaproteobacterial type |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACTGATC CGGACATGCT GCGCGATGGC GATGACCCCA TTGACTGGAC CACACGACAG CAATCGCTGG CCTCCGACCC GGCCCGTTCC GCCTGGGTCT CGGCCAATGC CGGGTCCGGC AAGACCCATG TGCTGACACA GCGTGTGATT CGCCTGCTGC TGGCGGGCGC GCGGCCCTCT TCTATTCTTT GCCTGACCTA TACCAAGGCG GCGGCCTCTG AAATGTCGAA CCGGGTGTTC GACCGGCTTG CCGAATGGGC GACCTTGTCC GACGAGGAGC TTTCCCGCCG GATCGAAACC ATCGAGCGCC GACCGCCGGA TCGCATGAAG ATTGCCGAGG CGCGGCGGCT GTTTGCCCGC GCCCTGGAAA CACCGGGCGG CTTGAAAATC CAGACCATCC ATGCCTTTTG CGAGGCGCTG CTGCACCAAT TTCCGCTGGA AGCCAATGTG GCCGGGCATT TTTCGGTGCT GGATGACCGC GCCGCCTCGG TGCTTTTGGC CGATGCCCGC CGTTCGTTGT TGACGGCGAC CGCTGCCGAA GACGATGCAA ATCTCGCCGA AGCCTTTGCC GAAGTGTTGA GCCTTGGCGA TGAATTCGGG CTGGAAAACC TGCTGTCGGA CATCGTTTCC AACCGCCATG CGGTACGCGG CTTTCTGGCG GTAGCCCGCC GAAAGGGCGG CGTGGAGAGT GCTTTGCGCA ATGCCTTGGG CCTTCAGCCT GACGAAACCG AGATATCGCT GGCCGAAGCC TATTGGCCGC TTCCCACCCT CGCAGGTCCG CAGCTTTCCA CCTATATCGA TCTGGCGCTC ACCAAGGGCG GTTCCCTTGT GCAGGGCGTC GCCCTGACGC TGGAGCGCGC CGTGCGCCAG CCTGACGCGC TGATCCGGGC GCAATTGCTG GAAGAGGCTT TTTATACCGG CTCCGATAAA CCAAAAGCCG ACCGGTCGCT GATTGCCGCC GCCATGAACA AGGCGGCCCC TCATCTGTCG GATGCGATTT TTGCGGCCCG CGACCATGTG GTGGCCTGCC GTGAGCGCCT GCGGCTGTTT CGGCTGTTCA AGGCAACACG GGCGGCGCTA ACGCTGGCCG AGCGGCTGGA CCATGATTAT GAAGAGCTGA AAAAGCGCAG CAGCCAGCTG GATTTCGAGG ATCTGATTGC CCGCACCGCC GAGCTTTTGA CCCGCAGCAC GGTCGGCCCC TGGGTGCATT ACAAGCTGGA TCAGGGCATC GACCATATTC TGGTCGATGA GGCGCAGGAT ACCAGCCCGG TACAATGGTC GGTGATCCGC TCGCTGCGCG AAGATTTTTT CTCCGGCCAG AGCGCCCGTC CGGTCCGCCG CACCTTCTTT GCGGTTGGCG ATGAGAAGCA ATCGATCTAC TCCTTCCAAG GTGCAAAGCC GGAACGGTTT TCGCAGGAAG CCCGCGAGAC CGAGCAGGAA GTGGCGCGTG GCAGCGAAAG CTTCAGCGCG GTGCGCCTGC CGCTGTCCTT CCGCTCCACC AATGCGGTGT TGTCAGCCGT CGATCAGGTG TTTTCGGTCA CCGAGAACGC CCGCGGCCTT TCGGCTGTTG CGGAACCAGT GGTGCATATG TCGAGCCGCA TCGGCCATCC CGGTGCGGTT GAAGTCTGGG AGATGATCGC GCCGGAAGGC AGCGAAAGTG AAGAGGATTG GACCGCACCC TTTGATGCAA CGCCGGAAAA TGCGCCCTCG GCCATGCTGG CGCGGCGGAT CGCCCAGCGG ATCGAGATCA TGCTGGCCCG CGAGACCATC GTGGAAAAGG GGGTGGAGCG GTCCATAGAA GCAGGCGACA TCCTCATTCT GGTGCGCAAA CGCGGCGCTT TCGTCAATGC GCTGACACGG GCCTTGAAGC GGCGCAGCAA TATTCCGGTG GCCGGGGCCG ACCGGTTGCG GCTGACAGGC CATATCGCCG TGCAGGATCT GCTGGCACTG GGGCGATTCG TTCTTTTCAC CGCCGATGAC CTGTCGCTGG CGGCGCTGCT GAAGAGCCCG TTGTTCAACC TGAGCGAAGA CGATGTGTTT GAAGTGGCAG CACGGCGCGG CGAGATCTCG GTGTTTGCCG AGATTGCCCG GCTGGCGGAG GCTGGGTCGG AAAAATGGCA GGCGGCCCTT GCCCGTCTGC ACCGCTATGT GGCCTTGGCG CGGGATCTTC TGCCCCATGA TTTCTATGGT CGGGTGCTTG GTCCCCTGGG GGGACGACGC GACTTTCTGG CTCGGCTTGG CAGCGAGGTC AGCGATATCA TCGATGAATT CCTGACCTTT ACTCTTTCCC ATGAACAGGC GGGCCTGCCG GGCCTGCAAT CCTTCATCAC CACGCTGGAG CAGGAAGCCC CGGAAGTGAA GCGCGAACAG GACAAGGAGC GCAGCGAGGT GCGCATCATG ACCGTTCATG CCTCCAAGGG GCTGGAAGCA CCGATTGTCT TTCTGGTCGA TGATGGCTCC AAAGCCTTCA ACCATACACA TCTGCCAAAA TTCCGGATGA TCGAGACCGG AGCGCAGCCC CAGGAATGCC CGGTCTGGGT GCCGGTGAAA GCGGTTGATA ATCCTCTGAC CGCTGAGGAC GTGGCAAAGC GAAAACAGGC CATCGAGGAG GAATATCGAC GCCTGCTCTA TGTCGGCATG ACGCGGGCTG CCGACCGGCT GGTGGTCTGC GGTTATCGCG GCAAGCAGGT GCAAACTGAA ATCTGGCACC AGATGGTCTG GTCTGCGCTG GAATTGGACA CGGAGCGGTG CCGTCAGCAG GGCTTTGGCG GGCCAGAGGG GGACTGGACC GGGCTGCTCT GGGAAAATGC CGTCGTTCCG GGCCGATTCG AACGCCAGGA AAAACGCCAG GAAAAACGGG AGCTGGAAAC CTTGCCGGAG GCGCTGCTGC GGCCAGCGCC GCCGCCGCCA CGCTTGCCAC GGCCTTTAAG TCCCTCCGGG GCCGGGATCG AGGTGAATGA CGAGGACGGC GACATGCTGC TGCGCTCGCC GTTGTTCAGC AAAGGGGAGG ATGCCGGGTT GGCGCTGCAA AAGGGCCGGT TGGTGCACCG GATGCTGCAA ATGTTGCCGG GCCTGCCCGC CGATGAACGC AAACCCGCCG CCCGCCGCTA TGGCGAGCGC GCCGCCCGGT TCTGGCCCGC CCATGAGCGC GACCGCTTGG TGGAGAGTGT TTTGGCTATC CTTGACCATC CGGCCTTGAG CGAGGTGTTT TCCAGCCATG CGCAGACGGA ATTTTCGCTG ATGGGAACTA TCCGGCTTGG CGCAGAACAG CGCGCCGTCT CGGCGCGAGT GGACCGAATG GCGGTTACGA ACGAGAAAGT GATTCTGCTG GATTACAAGA CCAACCGGCA GCCGCCGCGT CAGGAAAGTG AAGTGCCACT GTCCCATTCG GCCCAGCTTG CCATCTACCG CGAATTGCTG AAGCCGCTCT ATCCGGGACG GGTGATCGAG TGCCTGCTGG TCTATACCGA AGGGCCGCAT GTGGTGGCGC TGACGGAGGC GGGTTTGCAC GGCGCATTAC AAGAGCTTCA GACCATTCAA AACACCTAG
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Protein sequence | MTDPDMLRDG DDPIDWTTRQ QSLASDPARS AWVSANAGSG KTHVLTQRVI RLLLAGARPS SILCLTYTKA AASEMSNRVF DRLAEWATLS DEELSRRIET IERRPPDRMK IAEARRLFAR ALETPGGLKI QTIHAFCEAL LHQFPLEANV AGHFSVLDDR AASVLLADAR RSLLTATAAE DDANLAEAFA EVLSLGDEFG LENLLSDIVS NRHAVRGFLA VARRKGGVES ALRNALGLQP DETEISLAEA YWPLPTLAGP QLSTYIDLAL TKGGSLVQGV ALTLERAVRQ PDALIRAQLL EEAFYTGSDK PKADRSLIAA AMNKAAPHLS DAIFAARDHV VACRERLRLF RLFKATRAAL TLAERLDHDY EELKKRSSQL DFEDLIARTA ELLTRSTVGP WVHYKLDQGI DHILVDEAQD TSPVQWSVIR SLREDFFSGQ SARPVRRTFF AVGDEKQSIY SFQGAKPERF SQEARETEQE VARGSESFSA VRLPLSFRST NAVLSAVDQV FSVTENARGL SAVAEPVVHM SSRIGHPGAV EVWEMIAPEG SESEEDWTAP FDATPENAPS AMLARRIAQR IEIMLARETI VEKGVERSIE AGDILILVRK RGAFVNALTR ALKRRSNIPV AGADRLRLTG HIAVQDLLAL GRFVLFTADD LSLAALLKSP LFNLSEDDVF EVAARRGEIS VFAEIARLAE AGSEKWQAAL ARLHRYVALA RDLLPHDFYG RVLGPLGGRR DFLARLGSEV SDIIDEFLTF TLSHEQAGLP GLQSFITTLE QEAPEVKREQ DKERSEVRIM TVHASKGLEA PIVFLVDDGS KAFNHTHLPK FRMIETGAQP QECPVWVPVK AVDNPLTAED VAKRKQAIEE EYRRLLYVGM TRAADRLVVC GYRGKQVQTE IWHQMVWSAL ELDTERCRQQ GFGGPEGDWT GLLWENAVVP GRFERQEKRQ EKRELETLPE ALLRPAPPPP RLPRPLSPSG AGIEVNDEDG DMLLRSPLFS KGEDAGLALQ KGRLVHRMLQ MLPGLPADER KPAARRYGER AARFWPAHER DRLVESVLAI LDHPALSEVF SSHAQTEFSL MGTIRLGAEQ RAVSARVDRM AVTNEKVILL DYKTNRQPPR QESEVPLSHS AQLAIYRELL KPLYPGRVIE CLLVYTEGPH VVALTEAGLH GALQELQTIQ NT
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