Gene Avi_0053 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_0053 
Symbol 
ID7389049 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand
Start bp43973 
End bp44686 
Gene Length714 bp 
Protein Length237 aa 
Translation table11 
GC content60% 
IMG OID643649793 
Productnucleotidyltransferase protein 
Protein accessionYP_002548017 
Protein GI222147060 
COG category[J] Translation, ribosomal structure and biogenesis
[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1208] Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGTGCTGG CCGCAGGGCT CGGCACAAGA ATGCGTCCTA TCACTGACAC CATGCCAAAG 
CCTCTGGTGC GGGTGGCGGG CAAGACGCTG GTGGATTATG CGCTGGATCA TTTGCAACAG
GCGGGCGTAG AAACCGCTGT GGTCAACATT CACCATTTTC CCGAACAAAT GCTGGCGCAT
CTGGCCGGGC GCGATCAGCC GCGCATCGTG ATTTCCGATG AGCGCGATGG CTTGATGAAC
AATGGAGGCG GCCTGGCCAA AGGCATCAGG CATCTGGCTC CCGGCCCGTT GCTGGTGATG
AATGCCGACC TGTTCTGGAT CGGTGAGCCG AAGGACCACC CCACCAATCT GCAAAGACTG
GGGGAAGCCT TTGACCCGGC GCAGATGGAT ATGCTGATGC TCTGCGTCAC GCTGGAACAG
ACCACCGGCC ATAATGGCAA GAACGATTTC AACCTCGGCG CCGATGGCAG GCTGACCCGC
TATCAGACAG GCGATCCGAA TCCGGTGGTC TATGCCGGGG CCTTGGCCAT GGAGCACGCC
CTGTTGGACG ATGCGCCTGA TGATGCCTTC AATCTCAACA TCTATTTCGA TCGGGCCATT
GCCGAGGGGC GGTTGTTCGG GCTGATGCTG GAGGGCCAAT GGTTGACGGT TGGCACGCCG
GAGGCGATTG AAGAGGCGGA AACGGTGCTG GCCCGCCAGC CGCAGGACAT CTGA
 
Protein sequence
MVLAAGLGTR MRPITDTMPK PLVRVAGKTL VDYALDHLQQ AGVETAVVNI HHFPEQMLAH 
LAGRDQPRIV ISDERDGLMN NGGGLAKGIR HLAPGPLLVM NADLFWIGEP KDHPTNLQRL
GEAFDPAQMD MLMLCVTLEQ TTGHNGKNDF NLGADGRLTR YQTGDPNPVV YAGALAMEHA
LLDDAPDDAF NLNIYFDRAI AEGRLFGLML EGQWLTVGTP EAIEEAETVL ARQPQDI