Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_0053 |
Symbol | |
ID | 7389049 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 43973 |
End bp | 44686 |
Gene Length | 714 bp |
Protein Length | 237 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 643649793 |
Product | nucleotidyltransferase protein |
Protein accession | YP_002548017 |
Protein GI | 222147060 |
COG category | [J] Translation, ribosomal structure and biogenesis [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1208] Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGTGCTGG CCGCAGGGCT CGGCACAAGA ATGCGTCCTA TCACTGACAC CATGCCAAAG CCTCTGGTGC GGGTGGCGGG CAAGACGCTG GTGGATTATG CGCTGGATCA TTTGCAACAG GCGGGCGTAG AAACCGCTGT GGTCAACATT CACCATTTTC CCGAACAAAT GCTGGCGCAT CTGGCCGGGC GCGATCAGCC GCGCATCGTG ATTTCCGATG AGCGCGATGG CTTGATGAAC AATGGAGGCG GCCTGGCCAA AGGCATCAGG CATCTGGCTC CCGGCCCGTT GCTGGTGATG AATGCCGACC TGTTCTGGAT CGGTGAGCCG AAGGACCACC CCACCAATCT GCAAAGACTG GGGGAAGCCT TTGACCCGGC GCAGATGGAT ATGCTGATGC TCTGCGTCAC GCTGGAACAG ACCACCGGCC ATAATGGCAA GAACGATTTC AACCTCGGCG CCGATGGCAG GCTGACCCGC TATCAGACAG GCGATCCGAA TCCGGTGGTC TATGCCGGGG CCTTGGCCAT GGAGCACGCC CTGTTGGACG ATGCGCCTGA TGATGCCTTC AATCTCAACA TCTATTTCGA TCGGGCCATT GCCGAGGGGC GGTTGTTCGG GCTGATGCTG GAGGGCCAAT GGTTGACGGT TGGCACGCCG GAGGCGATTG AAGAGGCGGA AACGGTGCTG GCCCGCCAGC CGCAGGACAT CTGA
|
Protein sequence | MVLAAGLGTR MRPITDTMPK PLVRVAGKTL VDYALDHLQQ AGVETAVVNI HHFPEQMLAH LAGRDQPRIV ISDERDGLMN NGGGLAKGIR HLAPGPLLVM NADLFWIGEP KDHPTNLQRL GEAFDPAQMD MLMLCVTLEQ TTGHNGKNDF NLGADGRLTR YQTGDPNPVV YAGALAMEHA LLDDAPDDAF NLNIYFDRAI AEGRLFGLML EGQWLTVGTP EAIEEAETVL ARQPQDI
|
| |