Gene Avi_0042 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_0042 
SymbolpckA 
ID7389040 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand
Start bp31588 
End bp33198 
Gene Length1611 bp 
Protein Length536 aa 
Translation table11 
GC content58% 
IMG OID643649784 
Productphosphoenolpyruvate carboxykinase 
Protein accessionYP_002548008 
Protein GI222147051 
COG category[C] Energy production and conversion 
COG ID[COG1866] Phosphoenolpyruvate carboxykinase (ATP) 
TIGRFAM ID[TIGR00224] phosphoenolpyruvate carboxykinase (ATP) 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAGGAGC TTGGAGTGAA CAATAGCCGT CTTGGGATCG AGACCATTGG CTTGGGCAAG 
GCCGCCAATG TCCATTATAA TCTGCTGCCC GCCGCCCTTT ATGAGCATGC GATCCGCAAC
GGTGAAGCCG TGCTGACTGC GGACGGCGCG CTTTTGGCCG AGACCGGACA GCATACGGGC
CGCTCGCCCA AGGACAAGTT CATCCTGCGT GATGCCAATA CCGATAGCCA GATCTGGTGG
GACAATAACA AGCCAATGTC GAAAGAGCAT TTCGACATCC TGCATCAGGA CATGCTGGCG
CATGTGGCTG GCAAGACCCT GTTCGTACAG GATCTGATTG GTGGCGCCGA TGCCGCCAAC
GCTTTGCCAA CCCGCGTGGT AACGGAACTT GCATGGCATT CGCTGTTTAT CCGTAACCTG
CTGATTCGTC CGGAACGCGC CGCGCTTGCC GATTTCGAAG CGAAATTCAC CATTATCGAC
CTGCCCAGCT TCAAGGCTGA TCCGGCCCGT CATGGCTGCC GGACCGAAAC GGTCATCGCC
TGCGACTTCA CCAACAATAT CGTGCTGATC GCCGGTACCT ACTATGCCGG TGAAATGAAG
AAGTCGGTGT TCACGGCGCT GAACTACATG CTGCCCGCCA AACAGGTCAT GCCGATGCAT
TGCTCGGCCA ATGTTGGCCC GGCTGGTGAT TCGGCTGTGT TCTTCGGTCT GTCCGGCACC
GGCAAAACCA CGCTGTCTGC CGACCCTGCC CGCACACTGA TCGGCGATGA CGAGCATGGT
TGGGGCGAAG ACGGCATCTT CAACTTCGAA GGTGGCTGCT ACGCCAAGAC CATTCGTCTG
TCGGCGGAAG CTGAGCCGGA AATCTACGCC ACCACCAAGC GGTTCGGCAC GGTGCTGGAA
AATGTCGTTC TGGATGAAAA CCGGGTTCCG GATTTCAACG ATGGCTCGAA GACCGAAAAT
ACCCGTTGCG CCTATCCGCT GAACTTCATA CCCAATGCCT CGCCCACCGG CCGCGCCGGA
CATCCGAAGA CCATCATCAT GCTTACCGCA GATGCCTTCG GCGTCATGCC GCCGATCGCC
AAGCTGACAC CAGAACAGGC GATGTACCAC TTCCTTTCCG GCTACACCGC GAAAGTGGCT
GGCACGGAGC GCGGCGTAAC CGAGCCGGAA GCCACCTTCT CGACCTGCTT CGGCGCACCG
TTCATGCCTC GCCATCCGGC AGAATATGGC AATCTGCTCA AGGAGTTGAT TGCCCGCCAC
GAAGTGGATT GCTGGCTGGT CAACACTGGC TGGACCGGCG GTGCCTACGG CGTTGGTAAC
CGTATGCCGA TCAAGGCAAC TCGGGCGCTG CTGACGGCGG CTCTCTCCGG AGAGTTGAAG
AAGGTCGAGT TCCGCACCGA TGCCAATTTC GGCTTCGCGG TACCAGTTTC TGTCGAAGGC
GTCGATACCA GCATTCTCGA CCCCCGCTCG ACCTGGGCAA ATGGGACTGA CTATGACGCG
CAGGCCAAGA AACTGGTCGG CATGTTCATC GCCAATTTCG AGAAATTCGA AGCCCATGTG
GACAGCAATG TCCTTGATGC GGCTCCGGTT CTGGCTGTTG CTGCGCAGTA A
 
Protein sequence
MEELGVNNSR LGIETIGLGK AANVHYNLLP AALYEHAIRN GEAVLTADGA LLAETGQHTG 
RSPKDKFILR DANTDSQIWW DNNKPMSKEH FDILHQDMLA HVAGKTLFVQ DLIGGADAAN
ALPTRVVTEL AWHSLFIRNL LIRPERAALA DFEAKFTIID LPSFKADPAR HGCRTETVIA
CDFTNNIVLI AGTYYAGEMK KSVFTALNYM LPAKQVMPMH CSANVGPAGD SAVFFGLSGT
GKTTLSADPA RTLIGDDEHG WGEDGIFNFE GGCYAKTIRL SAEAEPEIYA TTKRFGTVLE
NVVLDENRVP DFNDGSKTEN TRCAYPLNFI PNASPTGRAG HPKTIIMLTA DAFGVMPPIA
KLTPEQAMYH FLSGYTAKVA GTERGVTEPE ATFSTCFGAP FMPRHPAEYG NLLKELIARH
EVDCWLVNTG WTGGAYGVGN RMPIKATRAL LTAALSGELK KVEFRTDANF GFAVPVSVEG
VDTSILDPRS TWANGTDYDA QAKKLVGMFI ANFEKFEAHV DSNVLDAAPV LAVAAQ