Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_0037 |
Symbol | hisF |
ID | 7389035 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 28176 |
End bp | 28970 |
Gene Length | 795 bp |
Protein Length | 264 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 643649779 |
Product | imidazole glycerol phosphate synthase subunit HisF |
Protein accession | YP_002548003 |
Protein GI | 222147046 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0107] Imidazoleglycerol-phosphate synthase |
TIGRFAM ID | [TIGR00735] imidazoleglycerol phosphate synthase, cyclase subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.981941 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACACTCA AGGCCCGCAT TATTCCTTGT CTCGACGTGA AGGATGGCCG CGTCGTCAAG GGCGTGAACT TTGTCGATCT CATTGATGCC GGTGATCCGG TCGAAGCGGC CAAGGCCTAT GACGCTGCCG GTGCCGATGA GCTGTGTTTT CTGGACATTA CCGCCTCATC CGATAATCGC GAGACGATTT TTGATGTCGT CGCCCGCACC GCAGATCATT GCTTCATGCC GGTCACGGTG GGGGGCGGTG TGCGGGCGGT CGGCGATATT CGCAAGCTGC TGCTGGCCGG TGCCGATAAG GTTTCAATCA ACTCGGCAGC CGTGAGTAAT CCCGATTTTG TCGCCGAAGC CGCCGATAAA TTCGGCAATC AATGTATTGT GGTTTCGATT GATGCAAAAC GTCGCCGAAG CCAGGCCAGC GGTGGCGATA ATCTCAGCGC CTGGGAGATT TATACCCATG GAGGGCGCAA CGCGACCGGC ATTGACGCTG TCGAATTTGC GGTCAAAATG GTCGAGCGCG GCGCAGGCGA ATTGCTGGTC ACGTCAATGG ATCGTGACGG CACCAAAAGC GGTTATGATT TGGAACTGAC CCGTGCCATC GCAGACGCGG TTCGGGTGCC GGTGATTGCC TCTGGCGGTG TCGGCACACT GGACGATCTG GTGGCGGGCG TCAGGCAAGG CCATGCCACT GCCGTTCTGG CGGCCTCGAT TTTCCATTTC GGCACGTATT CGATTGCGGA AGCCAAGGCC CATATGGCCA ATGCCGGTAT CCCCATGCGT CTCGACAAGG CCTGA
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Protein sequence | MTLKARIIPC LDVKDGRVVK GVNFVDLIDA GDPVEAAKAY DAAGADELCF LDITASSDNR ETIFDVVART ADHCFMPVTV GGGVRAVGDI RKLLLAGADK VSINSAAVSN PDFVAEAADK FGNQCIVVSI DAKRRRSQAS GGDNLSAWEI YTHGGRNATG IDAVEFAVKM VERGAGELLV TSMDRDGTKS GYDLELTRAI ADAVRVPVIA SGGVGTLDDL VAGVRQGHAT AVLAASIFHF GTYSIAEAKA HMANAGIPMR LDKA
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