Gene Avi_0025 details

Gene Information

• Locus tag: Avi_0025
• ID: 7389026
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 20263
• End bp: 20913
• Gene Length: 651 bp
• Protein Length: 216 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 643649770
• Product: hypothetical protein
• Protein accession: YP_002547994
• Protein GI: 222147037
• COG category: [S] Function unknown
• COG ID: [COG5482] Uncharacterized conserved protein

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAAACAT CCCTTTATCT CCCTGTGAAA TCGTTTCTCG AAAAAGCAGG CTATACCGTC 
AAAGGCGAAA TCGGCGGCTG TGATCTTGTG GGCCTGAGCG CTGACGATCC ATCCGTCGTG 
GTGATTTGCG AACTGAAACT GAGTTTCAAT CTGGAACTCA TCCTTCAGGC CGTAGACCGG 
GCAGCCATAT CCGACGAGGT CTGGATTGCC GCGAAAATCT CGGCCAAGGG CAGGGGGCGG 
GAGGCCGACA AGCGCTACCG CGACCTCTGC CGCCGTCTCG GCATCGGTAT GCTCGGCGTC 
TCCGCCAGCG GCGAGGTCAG CATCATCGTC GGCTCCGTTT CGCCCATGCC ACGCACCAAT 
CCGAAACGAC GCTCCCGCCT GATGCGCGAA CACCAGACCC GGCGCGGCGA TCCGGCGCTT 
GGCGGCAGCA CAAGAATGCC TGTGATGACC GCCTACCGCC AGAACGCCCT TGCCTGTGCG 
GCAATTCTTG TCGCCGAGCC GATGCGGGTT GGCGATGTGC GCAAAGCGGT CCCTGACGCC 
GGAAAGATTT TGCTGTCCAA TGTCTATGGT TGGTTTGAGC GGGTCGAGCG TGGGGTTTAT 
GGATTGACGG ATGGAGGACG AGACGCGCTG AGGCGATGGC CGCAGGGGTA A 

 

Protein sequence

METSLYLPVK SFLEKAGYTV KGEIGGCDLV GLSADDPSVV VICELKLSFN LELILQAVDR 
AAISDEVWIA AKISAKGRGR EADKRYRDLC RRLGIGMLGV SASGEVSIIV GSVSPMPRTN 
PKRRSRLMRE HQTRRGDPAL GGSTRMPVMT AYRQNALACA AILVAEPMRV GDVRKAVPDA 
GKILLSNVYG WFERVERGVY GLTDGGRDAL RRWPQG