Gene Avi_0021 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_0021 
SymboltrpA 
ID7389023 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand
Start bp16421 
End bp17260 
Gene Length840 bp 
Protein Length279 aa 
Translation table11 
GC content58% 
IMG OID643649767 
Producttryptophan synthase subunit alpha 
Protein accessionYP_002547991 
Protein GI222147034 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0159] Tryptophan synthase alpha chain 
TIGRFAM ID[TIGR00262] tryptophan synthase, alpha subunit 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACGCAGC GTATGGACAA ACGGTTCGCC GATCTGAAGG AAGAGGGCCG TCCGGCTCTC 
GTCACTTATT TCATGGGCGG CGATCCGGAT TTCGAAACGT CGCTCGCCAT CATGAAGGCC
TTGCCGCAGG CTGGTGCCGA TGTGATTGAG CTTGGCATGC CGTTTTCCGA CCCGATGGCC
GATGGTCCTG CCATTCAAAT GGCCGGTCAG CGCGCCCTGA AGGCCGGTCA GACCCTGGTA
AAAACCCTGG ATATGGCGCG GGAATTCCGC AAAGGCGATC AGGCTACGCC GATCGTCATG
ATGGGGTATT ACAATCCGAT CTATGTCTAT GGCGTCGAAA AATTCCTGGA TGATGCGCTG
GACGCGGGCA TTGACGGTTT GATTGTCGTC GATCTTCCGC CGGAAATGGA CGATGAATTG
TGCCTGCCAG CCCGCAAGCG CGATATCAAT TTCATTCGTC TGGCGACACC GACTACGGAT
GAGAAGCGCC TGCCGATGGT GCTGCAAAAT ACCTCTGGAT TCGTCTATTA TGTATCGATG
AACGGCATTA CAGGCTCGGC TTTGCCCGAT CCGTCCAAGG TTGCCGGTGC CGTCGGGCGG
ATCAAGGCCC ATACCGATCT GCCGATCTGC GTTGGCTTCG GCGTGAAGAC GGCGGAACAT
GCAAGGCTGA TTGGGGCCAG CGCCGATGGC GTCGTGGTCG GTACGGCCAT TGTCAATCAG
GTCGCATTGA GCCTGACCAA GGATGATAAG GCGACGGCGG ATACGGTGCA ATCGGTGGTA
ACCCTAGTGC GTGGGCTGGC AAGCGGCGTC CAGACTGCCC GGCTTGCGGC TGCGCAATAG
 
Protein sequence
MTQRMDKRFA DLKEEGRPAL VTYFMGGDPD FETSLAIMKA LPQAGADVIE LGMPFSDPMA 
DGPAIQMAGQ RALKAGQTLV KTLDMAREFR KGDQATPIVM MGYYNPIYVY GVEKFLDDAL
DAGIDGLIVV DLPPEMDDEL CLPARKRDIN FIRLATPTTD EKRLPMVLQN TSGFVYYVSM
NGITGSALPD PSKVAGAVGR IKAHTDLPIC VGFGVKTAEH ARLIGASADG VVVGTAIVNQ
VALSLTKDDK ATADTVQSVV TLVRGLASGV QTARLAAAQ