Gene Avi_0020 details

Gene Information

• Locus tag: Avi_0020
• Symbol: trpB
• ID: 7389022
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 15199
• End bp: 16419
• Gene Length: 1221 bp
• Protein Length: 406 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 643649766
• Product: tryptophan synthase subunit beta
• Protein accession: YP_002547990
• Protein GI: 222147033
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG0133] Tryptophan synthase beta chain
• TIGRFAM ID: [TIGR00263] tryptophan synthase, beta subunit

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGAACCAGA ACCCAATTCC GAATTCCTTC CGGTCCGGGC CGGATGAAGA TGGTCGTTTC 
GGCATTTTCG GAGGCCGCTT CGTGGCCGAA ACCTTGATGC CGCTGATCCT GGATCTGCAG 
GCGGAATGGG AAAATGCCAA GACCGACCCC AGCTTCAAGG CTGAACTCGA TCACCTCAAC 
ACCCATTATA CCGGGCGTCC GAGCCCGCTC TATTTCGCCG AGCGGCTGAC GGCGGAGCTT 
GGTGGCGCCA AGATCTATTT CAAGCGCGAC GAGTTGAACC ATACCGGTTC GCACAAGATC 
AACAATTGTC TCGGCCAGAT CCTGCTGGCC AAGCGCATGG GCAAGACCCG GATTATCGCC 
GAGACCGGCG CTGGCCAGCA CGGCGTGGCC TCGGCCACCG TCGCGGCTCG TTTCGGTCTG 
CCCTGCATCG TCTATATGGG TGCCACTGAT GTGGAGCGCC AGGCACCGAA CGTCTTCCGC 
ATGAAGCTGC TCGGTGCGGA AGTCCGCCCG GTGAGTTCAG GGCATGGAAC CTTGAAGGAT 
GCGATGAACG AGGCCCTGCG CGACTGGGTC ACCAATGTCG ATGAGACCTA CTACATGATC 
GGCACGGCTG CCGGTCCGCA TCCCTATCCG GAAATGGTCC GTGAATTCCA GTCGGTGATC 
GGCAAGGAAT CCCGCGAGCA GATGATGGCT GCCGAAGGCC GCCTGCCGGA TATGCTGGTG 
GCAGCTGTCG GCGGTGGCTC CAATGCCATT GGCCTGTTCC ATCCGTTCCT CGATGATGAG 
AGCGTGCGGA TGATCGGTGT CGAGGCTGGC GGCAAGGGGC TTGATGGCAA TGAGCATTGC 
GCCTCGCTGA CCGCAGGCTC CCCTGGCGTC CTGCATGGCA ACCGCACCTA TCTGCTGCAA 
GACAGCGACG GGCAGATCAA GGATGGCCAT TCGATTTCGG CCGGGCTTGA TTATCCGGGT 
ATCGGTCCGG AACATTCCTG GTTGAAGGAT ATCGGCCGGG TGGAATATGT GCCGATCATG 
GATACCGAAG CGCTGGAGGC TTTCCAGCTT CTGACCCGCA CCGAAGGCAT TATTCCGGCT 
CTCGAACCCA GCCACGCCCT GGCCGAGGTG ATGAAGCGCG CTCCGAAAAT GGGCAAGGAC 
GAGATCATCC TGATGAACCT TTGCGGACGC GGCGACAAGG ACATCTTTAC GGTCGGCAAG 
ATTCTGGGAA TGGGGCTCTG A 

 

Protein sequence

MNQNPIPNSF RSGPDEDGRF GIFGGRFVAE TLMPLILDLQ AEWENAKTDP SFKAELDHLN 
THYTGRPSPL YFAERLTAEL GGAKIYFKRD ELNHTGSHKI NNCLGQILLA KRMGKTRIIA 
ETGAGQHGVA SATVAARFGL PCIVYMGATD VERQAPNVFR MKLLGAEVRP VSSGHGTLKD 
AMNEALRDWV TNVDETYYMI GTAAGPHPYP EMVREFQSVI GKESREQMMA AEGRLPDMLV 
AAVGGGSNAI GLFHPFLDDE SVRMIGVEAG GKGLDGNEHC ASLTAGSPGV LHGNRTYLLQ 
DSDGQIKDGH SISAGLDYPG IGPEHSWLKD IGRVEYVPIM DTEALEAFQL LTRTEGIIPA 
LEPSHALAEV MKRAPKMGKD EIILMNLCGR GDKDIFTVGK ILGMGL