Gene Avi_0016 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_0016 
SymboldepA 
ID7389018 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand
Start bp11732 
End bp13027 
Gene Length1296 bp 
Protein Length431 aa 
Translation table11 
GC content56% 
IMG OID643649762 
Productintracellular PHB depolymerase 
Protein accessionYP_002547986 
Protein GI222147029 
COG category[I] Lipid transport and metabolism 
COG ID[COG4553] Poly-beta-hydroxyalkanoate depolymerase 
TIGRFAM ID[TIGR01849] polyhydroxyalkanoate depolymerase, intracellular 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTTTATC AACTGTATGA AATGAATCAC GCAGCCATGG CTCCTTTGCG GGCCACGGCA 
GATGCCATGC GTCTAGCCTT CCGCAATCCG CTGAACCCGC TGACTCACAC CGTTATCGGC
CGGACAATGG CCGCAGGCTT CGAGGTGATC GAGCGCAACA CGCGGCGCTA TGGCAAGCCC
GAATTCGGTC TTCCGACCAC GGTGATCGAC GGATCGCCTG TGAAGATCAC CGAGGAAGTC
ACGTGGTCCA AGCCGTTCTG CAATCTCATT CATTTCAACC GGAGCCTGAC CCAGCCCCGG
AGTAACGACC CGAAAATCCT GATCGTCGCG CCGATGTCAG GCCATTACGC CACCTTGTTG
CGCGGCACTG TTGAGGCCTT GCTGCCCAGT GCCGATGTTT ATATTACCGA CTGGATCGAT
GCCCGCATGG TGCCGATGAC GGACGGAACG TTCGACTTCG ATGACTATGT CGATTACGTG
ATCGAGATCC TGCATCATCT CGGCCCCAAC ACCAATCTCG TCGCCGTCTG CCAGCCCTCC
GTTCCCGTGC TGGCTGCCGT GGCCCGGATG GAGGCCGAAA ACGATGAATT CGTGCCATCC
TCGATGACAT TGATGGGTGG CCCGATCGAT ACGCGCATCA ATCCGACAGC CGTTAATGAG
CTGGCCAAGA ACAAGCCGAT TGAGTGGTTT GAGGAAAACG TCATCATGAA CGTTCCTTGG
CCACAGCCGG GCTTCCTGCG GCCCGTCTAT CCGGGCTTCC TTCAGCTTTC AGGATTCATG
TCGATGAATC TTGATCGGCA TATGATTGCC CAGAAAGATT TCTATGTGCA TCTGGTGAAG
AACAACGGCG ATTCCGCCGA AAAGCACCGG GAATTCTATG ATGAATATCT GTCGGTCATG
GACCTGACGG CTGAGTTCTA TCTGCAAACG GTGGAAGCCG TGTTCATGCG GCATTCCCTG
CCGAAGGGCG AGCTGATGCA TCGTGGCAAA CCGGTCGATT GCGGCGCCAT CCGCAATGTG
GCTCTTTTGA CGGTCGAAGG CGAGAACGAC GATATTTCCG GCGTCGGCCA GACAAAGGCG
GCACAGACGC TCTGCACCAA TCTCGCCGAT GACAAGCGCA TGCATTATAT GCAGCCGGAT
GTCGGCCATT ACGGCGTCTT CACTGGTTCT CGGTTCCGTC GGGAGATCGC ACCGCGCATC
GTTGCTTTTG CCAAGCAGCA TTCCAATCAA CCGACCTCGG CGGTAAAGCG GGCAACCATG
GTAAAGCGCG TGATCAAGGG TGGAAAATCG ACCTAA
 
Protein sequence
MFYQLYEMNH AAMAPLRATA DAMRLAFRNP LNPLTHTVIG RTMAAGFEVI ERNTRRYGKP 
EFGLPTTVID GSPVKITEEV TWSKPFCNLI HFNRSLTQPR SNDPKILIVA PMSGHYATLL
RGTVEALLPS ADVYITDWID ARMVPMTDGT FDFDDYVDYV IEILHHLGPN TNLVAVCQPS
VPVLAAVARM EAENDEFVPS SMTLMGGPID TRINPTAVNE LAKNKPIEWF EENVIMNVPW
PQPGFLRPVY PGFLQLSGFM SMNLDRHMIA QKDFYVHLVK NNGDSAEKHR EFYDEYLSVM
DLTAEFYLQT VEAVFMRHSL PKGELMHRGK PVDCGAIRNV ALLTVEGEND DISGVGQTKA
AQTLCTNLAD DKRMHYMQPD VGHYGVFTGS RFRREIAPRI VAFAKQHSNQ PTSAVKRATM
VKRVIKGGKS T