Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_0016 |
Symbol | depA |
ID | 7389018 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 11732 |
End bp | 13027 |
Gene Length | 1296 bp |
Protein Length | 431 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 643649762 |
Product | intracellular PHB depolymerase |
Protein accession | YP_002547986 |
Protein GI | 222147029 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG4553] Poly-beta-hydroxyalkanoate depolymerase |
TIGRFAM ID | [TIGR01849] polyhydroxyalkanoate depolymerase, intracellular |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTTTATC AACTGTATGA AATGAATCAC GCAGCCATGG CTCCTTTGCG GGCCACGGCA GATGCCATGC GTCTAGCCTT CCGCAATCCG CTGAACCCGC TGACTCACAC CGTTATCGGC CGGACAATGG CCGCAGGCTT CGAGGTGATC GAGCGCAACA CGCGGCGCTA TGGCAAGCCC GAATTCGGTC TTCCGACCAC GGTGATCGAC GGATCGCCTG TGAAGATCAC CGAGGAAGTC ACGTGGTCCA AGCCGTTCTG CAATCTCATT CATTTCAACC GGAGCCTGAC CCAGCCCCGG AGTAACGACC CGAAAATCCT GATCGTCGCG CCGATGTCAG GCCATTACGC CACCTTGTTG CGCGGCACTG TTGAGGCCTT GCTGCCCAGT GCCGATGTTT ATATTACCGA CTGGATCGAT GCCCGCATGG TGCCGATGAC GGACGGAACG TTCGACTTCG ATGACTATGT CGATTACGTG ATCGAGATCC TGCATCATCT CGGCCCCAAC ACCAATCTCG TCGCCGTCTG CCAGCCCTCC GTTCCCGTGC TGGCTGCCGT GGCCCGGATG GAGGCCGAAA ACGATGAATT CGTGCCATCC TCGATGACAT TGATGGGTGG CCCGATCGAT ACGCGCATCA ATCCGACAGC CGTTAATGAG CTGGCCAAGA ACAAGCCGAT TGAGTGGTTT GAGGAAAACG TCATCATGAA CGTTCCTTGG CCACAGCCGG GCTTCCTGCG GCCCGTCTAT CCGGGCTTCC TTCAGCTTTC AGGATTCATG TCGATGAATC TTGATCGGCA TATGATTGCC CAGAAAGATT TCTATGTGCA TCTGGTGAAG AACAACGGCG ATTCCGCCGA AAAGCACCGG GAATTCTATG ATGAATATCT GTCGGTCATG GACCTGACGG CTGAGTTCTA TCTGCAAACG GTGGAAGCCG TGTTCATGCG GCATTCCCTG CCGAAGGGCG AGCTGATGCA TCGTGGCAAA CCGGTCGATT GCGGCGCCAT CCGCAATGTG GCTCTTTTGA CGGTCGAAGG CGAGAACGAC GATATTTCCG GCGTCGGCCA GACAAAGGCG GCACAGACGC TCTGCACCAA TCTCGCCGAT GACAAGCGCA TGCATTATAT GCAGCCGGAT GTCGGCCATT ACGGCGTCTT CACTGGTTCT CGGTTCCGTC GGGAGATCGC ACCGCGCATC GTTGCTTTTG CCAAGCAGCA TTCCAATCAA CCGACCTCGG CGGTAAAGCG GGCAACCATG GTAAAGCGCG TGATCAAGGG TGGAAAATCG ACCTAA
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Protein sequence | MFYQLYEMNH AAMAPLRATA DAMRLAFRNP LNPLTHTVIG RTMAAGFEVI ERNTRRYGKP EFGLPTTVID GSPVKITEEV TWSKPFCNLI HFNRSLTQPR SNDPKILIVA PMSGHYATLL RGTVEALLPS ADVYITDWID ARMVPMTDGT FDFDDYVDYV IEILHHLGPN TNLVAVCQPS VPVLAAVARM EAENDEFVPS SMTLMGGPID TRINPTAVNE LAKNKPIEWF EENVIMNVPW PQPGFLRPVY PGFLQLSGFM SMNLDRHMIA QKDFYVHLVK NNGDSAEKHR EFYDEYLSVM DLTAEFYLQT VEAVFMRHSL PKGELMHRGK PVDCGAIRNV ALLTVEGEND DISGVGQTKA AQTLCTNLAD DKRMHYMQPD VGHYGVFTGS RFRREIAPRI VAFAKQHSNQ PTSAVKRATM VKRVIKGGKS T
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