| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0007 |
|---|
| Symbol | secB |
|---|
| ID | 7389010 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 3977 |
|---|
| End bp | 4438 |
|---|
| Gene Length | 462 bp |
|---|
| Protein Length | 153 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 643649754 |
|---|
| Product | preprotein translocase subunit SecB |
|---|
| Protein accession | YP_002547978 |
|---|
| Protein GI | 222147021 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1952] Preprotein translocase subunit SecB |
|---|
| TIGRFAM ID | [TIGR00809] protein-export chaperone SecB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAATG AAAACAGCAA TGGGGCGGAG AGCCCGTCCC TGAATATCCT TGCACAATAT
ATCAAGGATC TGTCCTTCGA AAATCCGGGT GCGCCGCGCT CGCTCCAGGC CCGGGACAAG
GCCCCTTCGA TCAATATCAA CGTCAATGTC AACGCCAACC CGCTGTCGGA TAATGATTTC
GACGTGGTCC TGTCGCTGAC CGCCGAAGCG CGTGATGACG ATAAAGTGGT TTTTGCAGCC
GAACTGGTTT ATGGCGGCGT CTTCCGCATC ACCGGGTTCC CACAGGAACA TATGCTACCG
GTGCTGTTCA TCGAATGCCC ACGCCTGCTC TTCCCGTTTG CGCGCCAGAT CATCGCCGAT
GCCACGCGCA ATGGCGGTTT CCCGCCGCTG ATGATCGATC CGATCGATTT TGCGCAGATG
TTTGCACAGC GCTTTGCCGA AGAGCAGGGT CGGGTCAACT GA
|
|---|
| Protein sequence | MANENSNGAE SPSLNILAQY IKDLSFENPG APRSLQARDK APSININVNV NANPLSDNDF
DVVLSLTAEA RDDDKVVFAA ELVYGGVFRI TGFPQEHMLP VLFIECPRLL FPFARQIIAD
ATRNGGFPPL MIDPIDFAQM FAQRFAEEQG RVN
|
|---|
| |