Gene Avi_0004 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_0004 
SymbolaroE 
ID7389007 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand
Start bp1648 
End bp2508 
Gene Length861 bp 
Protein Length286 aa 
Translation table11 
GC content55% 
IMG OID643649751 
Productshikimate 5-dehydrogenase 
Protein accessionYP_002547975 
Protein GI222147018 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0169] Shikimate 5-dehydrogenase 
TIGRFAM ID[TIGR00507] shikimate 5-dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCATGATT CACGTGAAAC ATTTTTGACG GGCGCCTTTG TTGCCGGCTA TCCAATCAAG 
CATTCACGGT CGCCGATCAT TCACAGCTAT TGGCTTCAAC AGCATGGTCT CATCGGTGGC
TATGATAAAC TGGAGATCGA CCCTGCAGAC ATCGCGGATT TCTTCGCCCG AATGAAGTCA
GGCAAGACCC GCTATCGGGG TGGTAACATT ACCATTCCGC ATAAAGAGGC GGCTTTTCAG
ATAGCGGATG TCCCCGACAT GGTGGCAACG CAACTTGGGG CGGCTAATAC GCTTTGGCTT
GAAAACGGTC TCATCCATGC CACCAATACC GATGTTTACG GTTTTCTGGC CAATCTGGAC
CAAGGCCATG CCGGCTGGGA TAAGGCGCGT AAGGCTGTGG TGCTGGGGGC GGGTGGTGCC
AGTCGGGCGA TCATTCAGGG GTTACTGGAT CGGGGATTGC AGCATGTTCA TGTTGTCAAT
CGGACCCTGG CGCGAGCGCA GGACCTGGCG GATCATTTTG GTGCGGCCGT CCATGCACAT
GGAAGAGAGC AACTGCAGGA GGTTTTGCAG GGCGCGGACC TCTTGGTCAA CACCACGTCT
CTTGGCATGA ATGGTGAAGA TGTTCCACAG ATTGACTGGG ATAGGCTGTC ACCCGGCGCT
TTGGTAACGG ATATTGTCTA CACGCCGCTG GAAACTGGCT TGTTGCGGCA GGCGAGGGCG
GCGGGCTTTG CCACTGTGGA TGGTCTTGGC ATGCTTTTGC ATCAGGCCGT ACCTGGCTTT
GAAAAATGGT TCGGCGTCCG GCCAGAGGTG ACGGATGATT TGCGGCAATT GTTGATTGCC
GATCTGGAGA AGCAGCGATG A
 
Protein sequence
MHDSRETFLT GAFVAGYPIK HSRSPIIHSY WLQQHGLIGG YDKLEIDPAD IADFFARMKS 
GKTRYRGGNI TIPHKEAAFQ IADVPDMVAT QLGAANTLWL ENGLIHATNT DVYGFLANLD
QGHAGWDKAR KAVVLGAGGA SRAIIQGLLD RGLQHVHVVN RTLARAQDLA DHFGAAVHAH
GREQLQEVLQ GADLLVNTTS LGMNGEDVPQ IDWDRLSPGA LVTDIVYTPL ETGLLRQARA
AGFATVDGLG MLLHQAVPGF EKWFGVRPEV TDDLRQLLIA DLEKQR