Gene Avi_0001 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_0001 
Symbol 
ID7387188 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand
Start bp203 
End bp1024 
Gene Length822 bp 
Protein Length273 aa 
Translation table11 
GC content54% 
IMG OID643649749 
Producthypothetical protein 
Protein accessionYP_002547973 
Protein GI222147016 
COG category[S] Function unknown 
COG ID[COG1806] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGAGAACA GAAAAAACTT CTTTCATCTG CACCTCATTT CTGACTCAAC GGGAGAAACA 
CTGATCTCGG CTGGACGGGC AGCAGCGGTT CAGTTTCCGC ATTCCAATCC GATCGAGCAT
GTCTATCCGC TGGTGCGCAA CCGCCGGCAG GCGGATGCCG TGCTCCAATC AATCGATAAG
GAACCCGGCA TCGTGCTTTA CACCATTGTC GATCCGGAGC TGGCGGACTT TATTGATCGG
CGTTGTATCG AGATCGGTGT ACCCAGCGTT AACGTGCTTG AGCCTGTTAT CGGGACGTTT
CAGGCCTATC TTGGTCCACT GGCGCGTCGG CGCGTCGGCG CCCAGCATGT GATGAATGCC
GATTATTTTG CGCGTATCGA GGCGCTGAAT TACACGATGG ATCACGATGA TGGCCAGATG
GCCGAGGATT ACGATCAGGC CGACGTCGTT CTGGTAGGGA TCAGTCGTAC GTCGAAAACC
CCGACCAGCA TCTATCTTGC CAATCGTGGC ATTAAGACCG CCAATATTCC CATCGTGCCA
GATTCGCCCT TACCGGAATC GCTGTTCGCT GCAAAAGGGC CATTGATCGT TGGATTGATC
GCCACGTCTG ATCGAATTTC ACAAGTTCGC GGCCATCGTG AATTGGGGAC TGTCAGTGGT
TTCGATCCAA GCGATTATAC GGACAGGGCG AGCATTGCGG AAGAATTGAA ATATGCCCGT
TCGCTGTGTG CCCGTCACAA TTGGCCGGTC ATTGATGTGA CGCGGCGATC AATTGAAGAG
ACAGCGGCGG CAATCATTGC GCTGCGTGCC AAGCCGCGCT AA
 
Protein sequence
MENRKNFFHL HLISDSTGET LISAGRAAAV QFPHSNPIEH VYPLVRNRRQ ADAVLQSIDK 
EPGIVLYTIV DPELADFIDR RCIEIGVPSV NVLEPVIGTF QAYLGPLARR RVGAQHVMNA
DYFARIEALN YTMDHDDGQM AEDYDQADVV LVGISRTSKT PTSIYLANRG IKTANIPIVP
DSPLPESLFA AKGPLIVGLI ATSDRISQVR GHRELGTVSG FDPSDYTDRA SIAEELKYAR
SLCARHNWPV IDVTRRSIEE TAAAIIALRA KPR