| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_6227 |
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| Symbol | dctB |
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| ID | 7381273 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 1221724 |
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| End bp | 1223526 |
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| Gene Length | 1803 bp |
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| Protein Length | 600 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643649695 |
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| Product | two component sensor kinase for C4-dicarboxylate transport |
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| Protein accession | YP_002547919 |
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| Protein GI | 222107128 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.970393 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGCTGGCGT TCCTAGCCTG TGTTGTCACC CTCCTTGCGC TTTATTTGGT TGGGCTTTAT
GCCCGCACTG CCGCATTGGA GGATTTGTCC GAGCAAGCAC GCACCAGCGC CAATCTCAAG
GTGGCTTTCT TGCGGGCGGT CTTGGAACGC CCTCGTTCCT TGCCGTTGCT GTTGTCGGAG
GATCAGCAGG TTGTGGATGC CTTGAGCCTT CGCACGGTCG CCGCGACGGA ACGATTGAAC
GACAAGCTAG AGCGTTTGGT TGCAGGCACA AGTGCTTCAG TTCTTTACGT CACAGACGCG
ACAGGACATG CCATTGCCTC CAGCAATTGG CGAGAGCCGG TGAGCTTTGT TGGCATCGAC
TATTCTTTTC GGGACTATTT TCGCCAATCC ATGCTGGCCG GCACAGCTGA ACATTTCGCG
CTCGGCAGCA TCAGCAAGCG TCCAGGCCTT TATATTTCCA GGCGTGTCGG CCCGGCTAGT
GCCCCCTTGG GTGTCGTGGT CGTGAAAGCA GAGTTTTCAC AGCTCGAAAG CGATTGGCGC
GAAGAGGGGC GGGCGGCGTT TGTCACCGAT GGGCATGGTG TCGTGCTGAT TTCCAGCCTG
CCGTCCTGGC GCTTCATGAC ATTGGCTGCA TTGCAGCCGG AGGAGTTGGT CCAAATACGC
AACAGTTTGC AATTCGGCGA TGCGCCTTTG CAGGCCCTGC CTATCAATCG CGCCCAGCAG
GTGCCAGGCA GCGGGATACC GGACGAGCTT TTGGTGCGTA CGGTTTTTCC CGGCGCCATA
CCTGCCGACT ATCTTGATCT ATCGGTCGCG GTGCCGACCA CCAGCTGGCA TCTCAACTAT
CTTGTCCCGA CCGAACCGGC AATCGCGGCG TCGATGCGGG AATGGCGACT GTTGACCTTG
GCCCTGCTGG CGCCATTTTT TCTGGTCGTC TCGCTGGTTC TTTGGCGGCG GCAGGCAACG
GTTATCCGTC TGGCGCGGGT GGAGGCGGAC CAGCTGGAGC TGGAGCGGCG GGTGGATGAA
CGAACCCACG ACCTTTCACG GGCCCGAGAC CGGCTGGAAT TGGAGATCGC CGGCCACAAG
ACCACCGAAC AGCGGCTGCA AGGTGTCCAG CAGGAATTGG TCCAGGCCAA CCGGCTGGCT
ATCCTGGGGC AGGTTGCGGC GGGCGTTGCC CATGAAATCA ACCAGCCTGT CGCAACGATC
AGGGCTTATG CTGAAAATGC CAGGGTGTTT CTGGAGCGTG CCCAGCCGGA GCAGGCAAAC
AGCAATCTTG GCGCCATTGC CTCGCTGACG GAGCGGATCG GCACGATCAC CGATGAATTG
AAGGCTTTTG CGCGCAAGGG TCGGACCGCG CCGGAACCAG TGCCGCTTGG AGCGGCGATC
GAGGGCGCGG TCATGCTGCT GCGCAGCCGT TTTGCCGGGC GGCTTGAGGC GCTTTCCCTT
CCCGATGTGG CTCCTGATCT GACGGTGAAA GGCAACAGGG TCCGCCTGGA GCAGGTCCTG
ATCAATCTTC TGCAGAATGC GCTCGAAGCA TTGGAGCAGC GCAGCGATGG CCGGGTTGAG
GTCTCGGTTC AAGAGACGGA GCAACATGTC GTGGTGACCA TCGAGGACAA CGGTCCGGGC
ATTCCAGAGG ATATCAGGCG TCTGCTTTTT ACCCCCTTCA CCACCTCAAA GGAAAAAGGT
CTTGGTCTCG GCCTGGTGAT TTCCCGTGAC ATTATCAGTG ACTATGGCGG CCGGATTGGT
GTCGAAAGCA CGCCATCCGG TACATGCTTT ACCATCCATC TTTTGAAAGC GGATATATCA
TGA
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| Protein sequence | MLAFLACVVT LLALYLVGLY ARTAALEDLS EQARTSANLK VAFLRAVLER PRSLPLLLSE
DQQVVDALSL RTVAATERLN DKLERLVAGT SASVLYVTDA TGHAIASSNW REPVSFVGID
YSFRDYFRQS MLAGTAEHFA LGSISKRPGL YISRRVGPAS APLGVVVVKA EFSQLESDWR
EEGRAAFVTD GHGVVLISSL PSWRFMTLAA LQPEELVQIR NSLQFGDAPL QALPINRAQQ
VPGSGIPDEL LVRTVFPGAI PADYLDLSVA VPTTSWHLNY LVPTEPAIAA SMREWRLLTL
ALLAPFFLVV SLVLWRRQAT VIRLARVEAD QLELERRVDE RTHDLSRARD RLELEIAGHK
TTEQRLQGVQ QELVQANRLA ILGQVAAGVA HEINQPVATI RAYAENARVF LERAQPEQAN
SNLGAIASLT ERIGTITDEL KAFARKGRTA PEPVPLGAAI EGAVMLLRSR FAGRLEALSL
PDVAPDLTVK GNRVRLEQVL INLLQNALEA LEQRSDGRVE VSVQETEQHV VVTIEDNGPG
IPEDIRRLLF TPFTTSKEKG LGLGLVISRD IISDYGGRIG VESTPSGTCF TIHLLKADIS
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