| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_6128 |
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| Symbol | pcaH |
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| ID | 7380777 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 1147344 |
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| End bp | 1148084 |
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| Gene Length | 741 bp |
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| Protein Length | 246 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 643649620 |
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| Product | protocatechuate 3,4-dioxygenase beta subunit |
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| Protein accession | YP_002547845 |
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| Protein GI | 222107054 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3485] Protocatechuate 3,4-dioxygenase beta subunit |
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| TIGRFAM ID | [TIGR02422] protocatechuate 3,4-dioxygenase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAGAATT CCCTGCCGGA AACCGGGCCA TTTTTTGCCC GTGACCGGGA TATGCATCCG
CCGGCCTATG CCCCTTGGTA CAAGACCAGC GTGCTGCGTT CGCCGCAGCG GGCGTTGATT
TCGCTTGAGG GTACCAAGAG CGAAATTACC GGCCCGGTCT TCGGGCACGG CCTGTTGAAC
GAGACCGATA ACGATCTGAT CCTAAACTAT GCAAAACCGG GCGAAATGGC GATTGGTCAG
CGCATTCTGG TGCATGGCCG GGTGCTGGAC GAGCGTGGGG TCGGTGTAAA CGGCGCTTTG
GTTGAATTCT GGCAGGCCAA TGCCGGTGGG CGTTATCGCC ACAAGAAGGA AACCTATCTG
GCGGCGCTCG ATCCGAATTT CGGCGGGGTA GGGCGTACCA TCACCGACGA GAACGGTTAT
TACTGGTTCA AGACCATCAA ACCCGGTGCG TATCCCTGGC CGAACGGCGT CAATGATTGG
CGTCCGGCGC ATATTCATTT TTCCATTTTC GGCCATGGGT TTGCCCAGCG GTTGATCACT
CAGATGTATT TCGAAGGTGA TCCGATGATC TGGCTGTGTC CGATCGTCAA AACCATTCCG
GATGAAGAGG CGATCAAGCG TCTGGTGGCT CCGCTGGATA TGAATGCGGC CATCCCGATG
GACATGCGCG CCTATAAATT CGATATCGTC TTGCGCGGAC GCCGCTCCAC ACTGTTTGAG
AATCGCAAGG AGGGCAACTG A
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| Protein sequence | MKNSLPETGP FFARDRDMHP PAYAPWYKTS VLRSPQRALI SLEGTKSEIT GPVFGHGLLN
ETDNDLILNY AKPGEMAIGQ RILVHGRVLD ERGVGVNGAL VEFWQANAGG RYRHKKETYL
AALDPNFGGV GRTITDENGY YWFKTIKPGA YPWPNGVNDW RPAHIHFSIF GHGFAQRLIT
QMYFEGDPMI WLCPIVKTIP DEEAIKRLVA PLDMNAAIPM DMRAYKFDIV LRGRRSTLFE
NRKEGN
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