Gene Avi_6117 details

Gene Information

• Locus tag: Avi_6117
• Symbol: pcaF
• ID: 7380768
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011988
• Strand: -
• Start bp: 1139326
• End bp: 1140531
• Gene Length: 1206 bp
• Protein Length: 401 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 643649611
• Product: beta-ketoadipyl CoA thiolase
• Protein accession: YP_002547836
• Protein GI: 222107045
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG0183] Acetyl-CoA acetyltransferase
• TIGRFAM ID: [TIGR01930] acetyl-CoA acetyltransferases; [TIGR02430] beta-ketoadipyl CoA thiolase

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACCGAAG CATTTATCTG CGATTATATC CGCACCCCCA TCGGCCGGTT TGGCGGAGCA 
CTTTCCTCCG TTCGCGCCGA TGACCTTGGC GCGGTACCAC TCAAGGCTCT CCTTGCTAAA 
CACGCCAATC TGGACTGGGA AGCCGTCGAT GACGTGATCT TCGGCTGCGC CAACCAGGCC 
GGTGAAGATA ACCGCAATGT GGCGCGCATG TCGTTGCTGC TGGCAGGCCT ACCGGTTTCA 
GTGACCGGCA CGACCATCAA CCGGCTTTGT GGCTCAGGCA TGGATGCCGT GATCGCAGCA 
GCCCGCGCTG TTAAATCCGG CGAGTCGGAA CTGATGATTG CCGGTGGCGT CGAAAGCATG 
AGCCGGGCGC CTTTCGTCAT GCCAAAGGCA GAGACCGCCT TTTCCCGCAA TGCCGAAATC 
TACGACACCA CCATCGGCTG GCGCTTCGTC AATCCGCTGA TGAAAAAGCA ATATGGCGTC 
GATTCCATGC CGGAAACCGG CGAAAATGTT GCTGAAGATT ACAAGATCTC CCGCCAAGAC 
CAGGATGCGT TTGCCGTCAG AAGCCAGAAC AAGGCATCGG AAGCGCAGGC CAATGGTCGT 
TTGGGGCAAG AAATCACCCC GGTCACCATT CCCCAGCGCA AGGGCGATCC GGTCATCGTG 
GACAAGGATG AGCACCCCCG TGCCACGACA ATTGAAACGC TGGCAAAGCT TGGCACGCCT 
TTCAAGAAGG AAGGCGGCTC AGTCACCGCT GGTAATGCCT CCGGTGTCAA TGATGGGGCA 
GCCGCGCTGA TCATTGCCTC TGAAGCTGCC GCCCGCAAAT ATGGCCTGAC CCCGATTGCC 
CGCATTATGG GCGGAGCGAC TGCCGGTGTG CCGCCCCGGG TGATGGGCAT TGGCCCTGCC 
CCCGCCAGCC AGAAGCTGCT GGACCGACTC GGCCTCACTC AACAACAGTT GGATGTAATC 
GAGTTGAACG AGGCCTTTGC CTCTCAAGGG TTGGCAACCC TGCGCCAGCT TGGCATTGCC 
GATGACGATC CACGTGTCAA CCGCAACGGC GGCGCTATCG CCCTTGGCCA TCCGCTCGGC 
ATGTCCGGCG CGCGGATTAC CGGCACGGCG GCACTGGAAT TGTCTCTGAC GGGCGGACGC 
TACTCGCTGT CCACCATGTG CATTGGCGTC GGCCAGGGCA TCGCAGTGGC GCTGGAGCGG 
GCGTAA 

 

Protein sequence

MTEAFICDYI RTPIGRFGGA LSSVRADDLG AVPLKALLAK HANLDWEAVD DVIFGCANQA 
GEDNRNVARM SLLLAGLPVS VTGTTINRLC GSGMDAVIAA ARAVKSGESE LMIAGGVESM 
SRAPFVMPKA ETAFSRNAEI YDTTIGWRFV NPLMKKQYGV DSMPETGENV AEDYKISRQD 
QDAFAVRSQN KASEAQANGR LGQEITPVTI PQRKGDPVIV DKDEHPRATT IETLAKLGTP 
FKKEGGSVTA GNASGVNDGA AALIIASEAA ARKYGLTPIA RIMGGATAGV PPRVMGIGPA 
PASQKLLDRL GLTQQQLDVI ELNEAFASQG LATLRQLGIA DDDPRVNRNG GAIALGHPLG 
MSGARITGTA ALELSLTGGR YSLSTMCIGV GQGIAVALER A