| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_6093 |
|---|
| Symbol | attK |
|---|
| ID | 7380746 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011988 |
|---|
| Strand | + |
|---|
| Start bp | 1114954 |
|---|
| End bp | 1116345 |
|---|
| Gene Length | 1392 bp |
|---|
| Protein Length | 463 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 643649589 |
|---|
| Product | NAD-dependent succinate aldehyde dehydrogenase |
|---|
| Protein accession | YP_002547814 |
|---|
| Protein GI | 222107023 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.336343 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTTACG CAACAACCAA TCCCTATACT GGCGAAACTC TTATCACTTT TCCCGAAGCA
ACCGACGCTG CCGTTCAGGC GGCAATCGCG GCGGCGGATG CCGCTTTTCA ACAATGGCGA
CAGACATCCT TTGTCGAGCG CGCCAAGGTC ATGCATGCTG CTGCCGAAAT CCTGCGCGGC
CAGACGGATG ATTATGCCAA GCTGCTGACC CTGGAAATGG GCAAGTTGAT GTCTGAAGCA
CGCGCTGAGG TGGGGCTTTC TGCCGATATC CTCGATTACT ACGCTGTCAA TGCCGAGCGC
CTGTTGAAGC CGGAACAGCT TCCCGTCGCC GACAAGGCTG AAGGTGAGGC GATCCTGGTG
CATGAGCCTC TCGGTGTGCT GCTGGCCATC GAGCCCTGGA ATTTCCCCTA TTACCAGATC
GCCCGGATCA TCGCGCCGCA GCTGTCGGCC GGAAATACCA TGCTGTTGAA ACATGCGTCG
AATGTGCCGC AATGCGCAGC CGCTTTTGAG CGGTTGATGC TGGAGGCCGG TCTGCCGAAG
GGTGCCTTCA CCAATCTTTA TGCGACGCGG AGCCAGGTGG AAATGATCCT CAACGATCCG
CGCGTCCATG GCGTGGCTTT GACCGGTTCG GAAGGCGCGG GTGCCACGAT TGCCGCGCAG
GCGGGGCAGG CTCTGAAAAA ATCCACCATG GAGTTGGGAG GAGCTGATGC CTTCTTGGTT
CTGGCCGATG CCGATATGGA AAAGACCGTG AAATGGGCAG TCTTCGGTCG CCACTGGAAT
GGCGGTCAGG TCTGCGTCTC GTCCAAGCGG ATGATTATCG TCGATGCGGT CTACGATGCC
TTTCTGGAAC AATACAAAAC CGGTGTCGCT GGGCTGAAAG CCGGTGATCC GTTCGATCCG
CAAACGACGC TTGCGCCGCT GTCCTCGCAA GGGGCTGCCG ACGAGATCCG TCAGAAGATT
GCCGAAGCAG TATCCTATGG GGCAACGGCA ACTGAAGTGG GGCCGCCGGT GCCAAACCAG
GGCGCTTTCG TGCAGCCAAC AATCCTGACC GACCTGGCTG ATGACAATCC TGCCCGTTAT
TGGGAGTTTT TCGGCCCGGT CTCCATGCTG TTTCGCGCCA AGGATGACGA TGACGCGATC
CGCATTGCCA ATGATACGCC CTATGGTTTG GGCGGCTCGA TCTTCACCCG TGACACCGCG
CGCGGGGTTG CTCTTGCCCA CCGGATCACC ACGGGCATGG TGTTCATCAA CCATCCGACC
ATGGTCAAGG CGGACCTGCC GTTCGGCGGC GTCAAACGTT CGGGCTATGG CCGTGAATTG
CTGGGCCTCG GCATCAAGGA ATTCGTCAAT CACAAGCTGA TTGATGTCGT GGATATCGAT
GCACCGTTCT GA
|
|---|
| Protein sequence | MAYATTNPYT GETLITFPEA TDAAVQAAIA AADAAFQQWR QTSFVERAKV MHAAAEILRG
QTDDYAKLLT LEMGKLMSEA RAEVGLSADI LDYYAVNAER LLKPEQLPVA DKAEGEAILV
HEPLGVLLAI EPWNFPYYQI ARIIAPQLSA GNTMLLKHAS NVPQCAAAFE RLMLEAGLPK
GAFTNLYATR SQVEMILNDP RVHGVALTGS EGAGATIAAQ AGQALKKSTM ELGGADAFLV
LADADMEKTV KWAVFGRHWN GGQVCVSSKR MIIVDAVYDA FLEQYKTGVA GLKAGDPFDP
QTTLAPLSSQ GAADEIRQKI AEAVSYGATA TEVGPPVPNQ GAFVQPTILT DLADDNPARY
WEFFGPVSML FRAKDDDDAI RIANDTPYGL GGSIFTRDTA RGVALAHRIT TGMVFINHPT
MVKADLPFGG VKRSGYGREL LGLGIKEFVN HKLIDVVDID APF
|
|---|
| |