Gene Avi_6082 details

Gene Information

• Locus tag: Avi_6082
• ID: 7380736
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011988
• Strand: +
• Start bp: 1105129
• End bp: 1105821
• Gene Length: 693 bp
• Protein Length: 230 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 643649579
• Product: transcriptional regulator GntR family
• Protein accession: YP_002547804
• Protein GI: 222107013
• COG category: [K] Transcription
• COG ID: [COG1802] Transcriptional regulators

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACAGAGA CCATCAAGGT GGAACGCCCC ACCAAGACGC TGCGGGAACT GGCGCTTGAG 
AAAGTCCGCG ATGCGATCAT CAGTGGTTAT TTCAAGCCGG GCGACCGGTT GGTCGAGCGT 
GACCTGTGCG CGCAGCTTGG GGTCAGCCGA ACGGTGGTGC GCGAAGTGCT GCGGCATCTG 
GAGTCCGAGG GTCTGGTCAG CAATCCACAG AGCAAGGGGC CGATGGTGGC GCTACTGGAT 
GTGGATGAAG CCCGGCAGAT CTATGAAATC CGTGCGGCTT TGGAAGGCAT GGCGGCGCGG 
CTTTGTGCGG AGAGGGGTGA TCCGGCTATT GTGGCTGGCT TGTCAGAGGC GCTGGACGCG 
ATCAAGGGTG GCTATGCTCG CCAGGATATG GCTGATGTCT TGAAGGAAAC GACGCGATTT 
TACGAGACCT TGTTTACCCG GATTGATAGG CAGGTCGCCT GGGGCGTGGT GCGGCAAATG 
ACCGTGCGGA TCAACCATTT GCGTTCTATG ACCATCAAGA CCGATGGCCG GGCGACGGAG 
GGACCAGCCC AGATGCAACG GATTGTCGAG GCGATCCGCA ATGGCGATGG ACCAGCCGCC 
GAACAGGCGG CAATTGATCA CGTTCAGCGC GCCTCCTCTA TAGCCGTCGC GGTGCTTGCG 
CAGCAGGCCC GATCCGCCAT TGAGATCGAA TAG 

 

Protein sequence

MTETIKVERP TKTLRELALE KVRDAIISGY FKPGDRLVER DLCAQLGVSR TVVREVLRHL 
ESEGLVSNPQ SKGPMVALLD VDEARQIYEI RAALEGMAAR LCAERGDPAI VAGLSEALDA 
IKGGYARQDM ADVLKETTRF YETLFTRIDR QVAWGVVRQM TVRINHLRSM TIKTDGRATE 
GPAQMQRIVE AIRNGDGPAA EQAAIDHVQR ASSIAVAVLA QQARSAIEIE