Gene Avi_6077 details

Gene Information

• Locus tag: Avi_6077
• Symbol: recQ
• ID: 7380897
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011988
• Strand: +
• Start bp: 1098878
• End bp: 1100734
• Gene Length: 1857 bp
• Protein Length: 618 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 643649574
• Product: ATP-dependent DNA helicase RecQ
• Protein accession: YP_002547799
• Protein GI: 222107008
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0514] Superfamily II DNA helicase
• TIGRFAM ID: [TIGR00614] ATP-dependent DNA helicase, RecQ family; [TIGR01389] ATP-dependent DNA helicase RecQ

Plasmid Coverage information

• Num covering plasmid clones: 4
• Plasmid unclonability p-value: 0.9148
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCGTCAA GCCAGCCACG CCACGAACCG ACATTCGAGC ATGGCGAAAG ACATCCGCTG 
TCCATTCTGA AGCGGGTCTA TGGCTATCCG GCTTTTCGCG GCAAGCAGGC CGAGGTGGTT 
CAGCAGGTGG TGGCTGGCGG CGATGCGGTC GTGCTGTTTC CGACCGGGGC CGGTAAATCC 
CTCTGCTTCC AGATCCCGGC GCTGTGCCGC GATGGGGTCG GCGTTGTGGT GTCGCCGCTG 
ATTGCGTTGA TGCGCGACCA GGTGGAGGCG TTGAAGCAAG TGGGTGTGCG GGCGGCGGCG 
TTGAATTCGT CTTTGTCGCG GGAGGAGTTT GTCGAGGTGC GGCGCGCCAT TGCCGATGGC 
ACGCTCGATC TGCTGTATGT CACGCCAGAG CGGATCGTCA CGCCTGCCTT CAAGGATGTG 
ATCGGCTCTG CGAAAATTGC GCTGTTTGCC ATCGATGAGG CCCATTGCGT TTCGCAATGG 
GGCCATGATT TCCGCCCGGA ATATCGTGAA CTGGGCAAGC TCGCCGAGAC CTATCCCGGC 
GTGCCGCGCA TGGCGCTGAC GGCGACCGCC GATCCCCATA CACGCGATGA CATTATCGAC 
AAGCTTGGTC TGCAATCGGC CAAGGTGTTT ACCACCTCCT TCGACCGGCC CAATATCGCC 
TATGAAATCG TCGAGCGCGA CCAGCCGCGC CAGCAGCTGC TGCGGTTTCT TTCCCGCCAT 
GAAGGCGAGA GCGGCATTGT CTATTGCCTG TCGCGCGCCA AAGTCGAGGA AACGGCGGAA 
TGGCTCAACA CGCAAGGGGT GAGGTCGCTG GCCTATCACG CTGGCATGGA CCGGGTATTG 
CGTGATGCCA ATCAGGATGC GTTCCTGAAG GAGGAAAACC TTTGCCTTGT CGCAACCGTC 
GCCTTCGGCA TGGGCATCGA CAAGCCGAAT GTGCGCTATG TGGCGCATCT TGATCTGCCT 
GGTTCCGTCG AGGCCTATTA CCAGGAAACC GGGCGAGCCG GACGCGACGG GCTGCCGTCG 
GATGTGTGGA TGGCCTATGG TATGGCGGAT GTCATCCAGC GCGGGCGGAT GATCGATGGC 
GGCACCTCGG CTGAGGAGGT CAAGCGGGTC GAGCGAGCCA AGTTGAATGC GCTGCTGGCA 
ATTTGCGAGA CCCCCGGCTG CCGTCGTCAG GCAATTCTGG CGCATTTCGG CGAAGTGCAT 
CCCGGTTCCT GCGGCAATTG CGATACCTGC CTGAAGCCGG TGGAAACCTG GGATGGGACT 
GACGCGGCGA TCAAGGCGCT GGCGGCGATC TACCGGACCG GGGAGCGTTT CGGCACCGGC 
CATGTTATTG ATGTGCTGCT GGGGAATGAG AACGACAAGA CCGCCCGTTT CGGCCACGTT 
GACATGCCGG TTTTCGGTGC GGGCAAGGAT CTGCCGTTAA AAACCTGGCA ATCGGTGTTC 
CGGCAGTTGC TGGCCGCCGG TCTGATCCGG GTCGATCATG ACGCTTTCGG CGCGTTGAAA 
CTGGAGCCGG ACGCGCGCGC CGTCTTCAAG CGGGAGCGTG AAGTGCGATT CCGCAAGGAC 
CGTCCGACCA AGGGCAAGGC GGCACGCACT GCGTCACCCG CCGCCGCACG AGCCAAGTCG 
GCGCTGGAGG GGGCCGATAT GGAACTGTTC GAGGCGCTCA GGGCGGCGCG AATGGCGATT 
GCCAAGGATC TTTCCGTGCC GCCTTATGTT GTATTCCCGG ATACGACGCT GATTGCCTTT 
GCAACGGAAA GGCCTGATAG CCGGGAGGCG CTGCTGGGTA TTTCTGGCGT CGGCCAATCA 
AAGCTTGAAC GGTATGGCGA TGCTTTCCTG GAGGTTATCC AGGCGCATGA GCGATAA 

 

Protein sequence

MPSSQPRHEP TFEHGERHPL SILKRVYGYP AFRGKQAEVV QQVVAGGDAV VLFPTGAGKS 
LCFQIPALCR DGVGVVVSPL IALMRDQVEA LKQVGVRAAA LNSSLSREEF VEVRRAIADG 
TLDLLYVTPE RIVTPAFKDV IGSAKIALFA IDEAHCVSQW GHDFRPEYRE LGKLAETYPG 
VPRMALTATA DPHTRDDIID KLGLQSAKVF TTSFDRPNIA YEIVERDQPR QQLLRFLSRH 
EGESGIVYCL SRAKVEETAE WLNTQGVRSL AYHAGMDRVL RDANQDAFLK EENLCLVATV 
AFGMGIDKPN VRYVAHLDLP GSVEAYYQET GRAGRDGLPS DVWMAYGMAD VIQRGRMIDG 
GTSAEEVKRV ERAKLNALLA ICETPGCRRQ AILAHFGEVH PGSCGNCDTC LKPVETWDGT 
DAAIKALAAI YRTGERFGTG HVIDVLLGNE NDKTARFGHV DMPVFGAGKD LPLKTWQSVF 
RQLLAAGLIR VDHDAFGALK LEPDARAVFK REREVRFRKD RPTKGKAART ASPAAARAKS 
ALEGADMELF EALRAARMAI AKDLSVPPYV VFPDTTLIAF ATERPDSREA LLGISGVGQS 
KLERYGDAFL EVIQAHER