Gene Avi_6076 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_6076 
Symbol 
ID7380896 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011988 
Strand
Start bp1096680 
End bp1098482 
Gene Length1803 bp 
Protein Length600 aa 
Translation table11 
GC content63% 
IMG OID643649573 
Productmembrane protein 
Protein accessionYP_002547798 
Protein GI222107007 
COG category[S] Function unknown 
COG ID[COG1289] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACATCAG AGACTGAAAC AGCACGCCGC CCTTCAGGAC ATTGGGTTCG CCGCATTGCG 
CGCTGGCTGG AACTGCGTGC AATCGGGTTG ACGCCTGAAC ATCTCGACAT CATTGATGGC
CTGCGCTCGG CCTTTATCGT CGGCGTTCCC GTCCTCATCG TCGCGGCAGG GCAAAACCAA
TTTGGCTGGT CGATTTTTGC GGCTTTCTGG ACCTGCCTTG CCGATACCGG CGGCGAAAAA
CGGTTCCAGC GGCGGATGCT GGCGACCTTC GCGCTGCTTG GCAGCCTTAC GGCTTTCCTC
GCGTCCTGGC TTGCGGGTTT CGGGTCCATA GCAGGGCTGG CCGCCGGCTC AATTCTCGTC
GGTTTGACCG CATTGCTGCC GCTGCGCTGG CCTGTCGTGC CGCTTGTCGC CACACTCCTT
GGCGTGGTTG GCGTTGTGGC GGCGGGTTAT CCTCACACGG CACCGCAAGC GGCACTGCTC
GCCTGTTCGT TTCTGGCTGG CAGCGCCTGG GCCGCGCTGG TGCTGACTGT CCTGTGGCCA
ACAGATGCCT GGCGCCCAGC ACGGCGCGCC ATTTCCGCCG TTTACGCCCG GCTGGCCGAT
ATGACGCTTG AGCTCGACAC CATATCTCAG CCCGCAGCCA TGCAAGCCTG GACCTTCAAA
AGCAGCCAAC ATCGGCGTGC TGTGCGCAAT GCGATGGAGC GCGCGCGGTC TCACCTTGCC
CGCGCAGCTC GTCCATCGGA GCAGAGCGAC AAGACCGCCC TCCATATCGC GCTTTTGGCG
GCGGACGATA TTTTTCACGC GCTTCTGGCG CTTGACCATC TGCGTTCATC CGAGCGGCAG
GCAGATATTG GCCAGCTTTG CGCCGAGGTT ATCCGGCCGA GCCTCATTGC GGCTGCCCAA
AATCTCTCCC TGCATACGGA GCCAGTGACC GAGCTGCAAA ATCGGCTTTC AGTGCTGGAA
AAGAGCGTTT CGGACCGCCG TGACGCCGTC GCGGGCGCGG TGCGGAGCAT TGCAACAGCA
CTCCAATGGA AAACCGCACC AGACGTTGCC GAAACGGCGG GACCGGAACA GGCCGCTTCG
GACAAGATGG CACAGGCCCG GCAGCGGCAA CATTTTTTGC GTGGGGCCGT TCGCAGTGCC
GTGGGGGTGA CGGTTGTCAC CGTCGTCGCC CATCTGCTGG CCTTGAACTA TCCCTATTGG
GCCGCCATGG CCGTGGTCGT GGTTTTGCAG CCGGACCGGC GGATGAGCTG GAGCCGGGCG
CTGGAGCGTA TCGTCGGTTC GGTTGTGGGG AGCGCCTTGG CTCTGGCGTT ACTGACCAGC
ATACCGGCAT CAGGGCTGCT TACCGCCATC ATCATTCCCC TCGCCGCAGC AACCATTGCC
CTGCGCTCCG TCAGTTATAC GCTGTTCGTC ACCGTGCTGA CCATGCTGTT CGTTCTGACC
ATGGACATGT TGCATCCAGG CGCTGGCATT GCATCGGCGC GAATGCTCGA CAATATCATC
GGCAGTCTCG CGGCAATCAT TGTCACCTTC CTCGTCTGGC CCGACAAGGC GCCGTCCCTT
TCAGAGCTGG CAGCCCGGGC GCTGGACGCC AATCGCGCTT ACCGTGATGC CGCCGAACGC
GGCGACGCGG CGCAGATCGC TCTCACGCGC CGCGCTGCCG GAATTGCCAG CACCGAAGCC
GAGATCGCTT TCCATGCACC GGATCGATAC CTTGGGAAAA CGCCCCCTGC CACCGATGTC
GAGACACTGG CAAAGGCGCG GCAACTCGCT GGCGAAGCGG CAGTTCTGTG GCATAGCCGG
TAG
 
Protein sequence
MTSETETARR PSGHWVRRIA RWLELRAIGL TPEHLDIIDG LRSAFIVGVP VLIVAAGQNQ 
FGWSIFAAFW TCLADTGGEK RFQRRMLATF ALLGSLTAFL ASWLAGFGSI AGLAAGSILV
GLTALLPLRW PVVPLVATLL GVVGVVAAGY PHTAPQAALL ACSFLAGSAW AALVLTVLWP
TDAWRPARRA ISAVYARLAD MTLELDTISQ PAAMQAWTFK SSQHRRAVRN AMERARSHLA
RAARPSEQSD KTALHIALLA ADDIFHALLA LDHLRSSERQ ADIGQLCAEV IRPSLIAAAQ
NLSLHTEPVT ELQNRLSVLE KSVSDRRDAV AGAVRSIATA LQWKTAPDVA ETAGPEQAAS
DKMAQARQRQ HFLRGAVRSA VGVTVVTVVA HLLALNYPYW AAMAVVVVLQ PDRRMSWSRA
LERIVGSVVG SALALALLTS IPASGLLTAI IIPLAAATIA LRSVSYTLFV TVLTMLFVLT
MDMLHPGAGI ASARMLDNII GSLAAIIVTF LVWPDKAPSL SELAARALDA NRAYRDAAER
GDAAQIALTR RAAGIASTEA EIAFHAPDRY LGKTPPATDV ETLAKARQLA GEAAVLWHSR