| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_6048 |
|---|
| Symbol | impE |
|---|
| ID | 7380874 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011988 |
|---|
| Strand | - |
|---|
| Start bp | 1067252 |
|---|
| End bp | 1068079 |
|---|
| Gene Length | 828 bp |
|---|
| Protein Length | 275 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 643649551 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002547776 |
|---|
| Protein GI | 222106985 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4455] Protein of avirulence locus involved in temperature-dependent protein secretion |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.853181 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTACCG CCTCCCGCCG CATTGCCAGC CTGCTCGATG ATGCAGATCT TGCCCAGGCC
ATGGATGCCG TCAAAGCCGA ATTGAAAACG GCGGCCAGCG ATCATGACCT GCGCCATCTC
TATATCGACC TGCTGATTCT GGCTGGCGAT TATGAAAAAG CCGACAGCCA ATGCGAATTG
GCTGTCCGCT TCCAGCCGCA GGATGCCGTC GGTTTTTCGA TGCTGCGCCA GCAGATCCGT
GGGATGGCAG CCCGCAAAGC CTGGTTTGAA ACCGGTGCCC TGCCGGATTT TCCCGGTGGC
CTCACCGCCA GCGACCAGAT TGCGCTAAAG CTCAACCTGG CCCTGAAGGA AGGAGCGGCA
AGCGAGGCCG TGGCCCTGCT TGCCGAACTG GAAGCGAGCC GTGGCACTGT GCCGATGCTA
TGGAACGGCG GCGCCGTTGC CGATATCCGC GATCTCGACG ACCGTATCCC TCATGCGCTT
GAAGTGCTGA CCACCGGCGG CGCCTATCTC TGGGTCGATT TTTCAAGGAT CGCGTCTGTT
ACGCCTCAAC CGATACGCCG CCCCCGGGAC ACGGCCTTCC GCCCGGCGGA ACTGACACTG
GAAAGCGGCG CCGAGGCGAC CGTGCTTCTT CCCGCCATTT ATTATGGCGC CGATTCCAGC
CCTGCCCTGC AACTCGGCCA TGAGACCGAG TGGATGGATG CGGTGGACGG GATCGTCACC
GGTCTTGGCC AGCGATGCCT GCTGGCGGGC GACGAACTGG TGTCTTTCCA CGATCTTGAA
AGCTTGCAAT CGGATGCGAC CGGCGAAAGG CAGGCTGCCC ATGGTTGA
|
|---|
| Protein sequence | MSTASRRIAS LLDDADLAQA MDAVKAELKT AASDHDLRHL YIDLLILAGD YEKADSQCEL
AVRFQPQDAV GFSMLRQQIR GMAARKAWFE TGALPDFPGG LTASDQIALK LNLALKEGAA
SEAVALLAEL EASRGTVPML WNGGAVADIR DLDDRIPHAL EVLTTGGAYL WVDFSRIASV
TPQPIRRPRD TAFRPAELTL ESGAEATVLL PAIYYGADSS PALQLGHETE WMDAVDGIVT
GLGQRCLLAG DELVSFHDLE SLQSDATGER QAAHG
|
|---|
| |