Gene Avi_6040 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_6040 
SymbolimpM 
ID7380866 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011988 
Strand
Start bp1054796 
End bp1056247 
Gene Length1452 bp 
Protein Length483 aa 
Translation table11 
GC content60% 
IMG OID643649543 
Productserine/threonine phosphoprotein phosphatase 
Protein accessionYP_002547768 
Protein GI222106977 
COG category[S] Function unknown
[T] Signal transduction mechanisms 
COG ID[COG0631] Serine/threonine protein phosphatase
[COG3913] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR03373] type VI secretion-associated protein, BMA_A0400 family 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCATTGC GACCTGCCCA GACAGAAAAG CCCGCCAATC AGGACCGGAT CGGGTTTTTC 
GGCAAATTAC CAAGCCATGG CGACTTCCTC TCGGATGGCC TGGAACGGGA GATGGTCGCG
ACGCTCGATG GCTGGATCCG TGGCGGCCTG CACGCCTGTG AACAGGAATT CGGCTCGGCT
TGGCCGGAGC TATTCAGCGC CTCCCCTCCT TGGCGGTTCA TCGTCGAAAA AGGCGTCTGG
GGCCAAGTGG CTCATGCGGG TGTCATGCTG GCCAGCCGTG ATCGGGTTGG TCGCAGTTTT
CCGCTGATCA TCATGGCGCA GATGCACCGC TTCACCCATC ACCCCCGCAC GCTGTTTCTG
GACCATACTT GGTTCATGGC CGCCGAAGGC CTGGCTGAAT CGACGATGAC GCGGGAATTT
GACATCAACC GCTTCACTGA AACCCTGAAG CGCATGCGTA TGCCCCGTCC CCAGGAGGAA
GAGGGCACCG CCACCGCCAG CAAGGATGGC ACTGCGCTCT GGTGGTATAT CGACCCGCAG
ACCTCAAAAC CGCAGGGCCT TCGCTTTTCA AGCCAGATGA AGGCCGAGGA CTTCCTGCGG
CTTTTCCGGC AAAGCGCCGG CCTTACATCC CGACCACAAG ACACAACCGC CCCTGCCTCA
TCCCGTGCCC CAGGGCCAGT CCCGATAAAA GCCGAGGCAA GACCTGCGCC TCAACGGACC
GCTCCAAGCC CGGATAAGCC GCCCAGAGAC CAACAAGCAC CTGAGCCGCA AGCAGCAGGG
CTACGGTATA GTTATGCCAC CCATGCCGGC ACACGATTTT CGATCAATGC GGATGGGCTA
TTCATCTGCG AAAAACCAAG GATTTTCGCC ATTGCCGACG GTGTTGGCGA CGACACCGCG
TCGCAGGAAG CCGCACGCTA TACTGCAGGC CAACTGGCCG AAATCGGTGA GACCGCCGAT
CTGGACACCA TATTGCAGGA AATCAAAGGC AAGCTTGGCA GGGCCAATAG CCTGTTGCAG
GCCCGCACGC AACGCACAGA CGGAACCGCA CCCGCCGCCA GCGTTGTTGT TGCCGCCTTG
GTGAATCATC AACTTCTGCT GGTTTGGGCG GGGGATGCTA GGGCCTATCT GTTGCGTGAC
GGCACAATGG TACCACTGAC CCGCGACCAT ATCGCCATCG GCCTGCAAAA ACGACTGCGG
CGCGGGGTAG GATTGGATCA GCAATTTTTG CCGGAAACGC TGACCACCGA CATATTACCG
GGCGACCGCC TGTTGTTATG CAGTTTTCCG CTGATCCAGG TCCTGACGGA GCGAACCGTC
GCGGAAATTC TGCACCAATG CACCGATACA GAAAGCGCCG AGCGGTTGGT TCAGGAGGCT
TTGATTGCCA ATGTGCGCGA AAATGTGAGC GCTATCGTCG TTAGCCTGGC ACGTAGCGAT
GCCTCTGCCT GA
 
Protein sequence
MALRPAQTEK PANQDRIGFF GKLPSHGDFL SDGLEREMVA TLDGWIRGGL HACEQEFGSA 
WPELFSASPP WRFIVEKGVW GQVAHAGVML ASRDRVGRSF PLIIMAQMHR FTHHPRTLFL
DHTWFMAAEG LAESTMTREF DINRFTETLK RMRMPRPQEE EGTATASKDG TALWWYIDPQ
TSKPQGLRFS SQMKAEDFLR LFRQSAGLTS RPQDTTAPAS SRAPGPVPIK AEARPAPQRT
APSPDKPPRD QQAPEPQAAG LRYSYATHAG TRFSINADGL FICEKPRIFA IADGVGDDTA
SQEAARYTAG QLAEIGETAD LDTILQEIKG KLGRANSLLQ ARTQRTDGTA PAASVVVAAL
VNHQLLLVWA GDARAYLLRD GTMVPLTRDH IAIGLQKRLR RGVGLDQQFL PETLTTDILP
GDRLLLCSFP LIQVLTERTV AEILHQCTDT ESAERLVQEA LIANVRENVS AIVVSLARSD
ASA