| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_6028 |
|---|
| Symbol | acrB |
|---|
| ID | 7380855 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011988 |
|---|
| Strand | - |
|---|
| Start bp | 1036618 |
|---|
| End bp | 1039752 |
|---|
| Gene Length | 3135 bp |
|---|
| Protein Length | 1044 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 643649530 |
|---|
| Product | acriflavin resistance protein B |
|---|
| Protein accession | YP_002547761 |
|---|
| Protein GI | 222106970 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCAAAAT TCTTCATACG GCGACCGATT TTCGCCTGGG TGATCGCGAT CGTGATCATG
CTTGGCGGCG GGTTGGCTAT CACCAGCCTG TCGATTTCGC AATACCCGGA AATCGCACCA
CCATCCGTAA AAATCAGCGC CACTTATACA GGTGCCAGCG CCGATACCGT CAAGAAGACC
GTTACTCAGA TCATTGAAGA CGGAATGACG GGGCTGGATG GCCTGACATA TATGACCTCT
TCTTCGACGT CTGGATCGTC ATCCATCACG TTGACCTTCG ACAACAGCAT CGATCCGGAC
ATGGCTCAGG TCCAAGTCCA GAACAAGCTG CAACTGGTGG AATCGCAATT ACCGTCCGTG
GTGCAGAATC TCGGCATCGA AGTGACGAAA TCGACTTCCA GTATTCTGTT GGTCGGTGCC
CTTGTGTCCA CGGATGGCAA GCGCACATCG GCGGACCTCG GCGATATTTT TTCCGCCCAG
ATTGAAGACC AGGTGAAACG CCTTGAAGGT GTCGGCAATA TCAATGCCTT CGGCTCCGCT
TTTGCCATGC GCATCTGGCT TGATCCGTTC AAATTGCGCA AGTTTCAGCT GACACCTGCG
GATGTCACCT CAGCCATTGA AGCACAGAAT ACCCAGATTT CGGTTGGCTC GGTTGGCGGT
CTTCCCGCTG TCGAGGGACA GCAGATCAAC GTCACGATGA CAGCCCAAAG CCAGCTGACC
ACGGTGTCGG ACTTTGAGCG GATCATTCTG AAAGTCGATA CCAGCGGTGC CAATGTCCGT
TTGAGCGACG TGGCCCGTGT TGAAATCGGC CAAGAGAGCT ATACATCCAC CTCGCGGTCG
AACCGTCAGG CGGCATCCGG CTTCGCGGTT AATCTTGCAA CGGGAGCGAA TGCTCTCGAT
ACGGCGTCGC GTGTGAAGGC CAAGCTGGCG CAGATCGCTC CGGCATTGCC TCAGAACGTC
AGCATCATCT ATCCTTACGA CACAACGCCT TTCGTATCAC TTTCGATCGA AAAGGTCGTT
CATACGCTGA TTGAAGCCAT CGTCCTCGTC TTCTTTGTCT TGTTGATCTT CCTACAGAAC
CTGCGGGCGA CATTCATTCC GATGATCGCC GTGCCCGTCG TTTTGCTTGG TACGTTTGGC
ATTCTAGCGC TGACGGGATA TTCGATCAAC ACACTGACCA TGTTCGCCAT GGTGCTTGCC
ATCGGCCTTC TCGTCGATGA TGCCATCGTC GTGGTGGAAA ATGTCGAACG CATCATGACC
GAAGAGGGCC TGCCCCCCCT GGAGGCGACC CAGAAATCCA TGGGTGAAAT CACTGGCGCC
ATCGTCGGCA TCGCCCTGGT GCTGACGGCC GTGTTCGTTC CCATGGCGTT TTTCGGTGGC
TCGACCGGCA TTATCTATCG TCAGTTTTCG GTCACCATCA TTTCGGCGAT GCTGCTTTCA
GCAGTTGTCG CACTGGTCCT GACACCTGCG CTTTGCGCGA CGATACTGAA ACCGATAGAC
AAGAGTCATA GGAAGACGAC CGGTCCAGCC GCGTGGTTCA ATCGCAATTT CGACCGCACG
ACCAATGGCT ATGTCTGGTC CATTGGTCAT CTGCTGAGGC GCCCGCTCCG GCTTCTGTTG
ATATTCGCGG TACTGGTCGG CGGTTGCGCC TGGCTGTTCC TGCGCCTGCC CTCCTCCTTC
CTTCCGCAGG AAGACCAGGG CGTGCTGATG ACGATCGTCC AGCTTCCAAA TGGCTCGACC
TCGGCGCAGA CCGGCGAAGT GATGAAAAAA GTTGAAGATT ACCTGCTCGA CAAGGAAAGC
AGCGTTGTCG ATTCGGTTTT CGCCGTCAAT GGTTTCAGCT TCAACGGGAG CGGCCAGAAC
TATGGCCTGG TTTTCGCCAA GCTGAAGGAT TTCGACCTGC GCAAGAAGCC GGATATGGCC
GCAAGTGCCA TCGTCCAGCG AGCGATGGGT TATTTCATGA CCATTCGTGA AGCGCAGGTC
TTTCCGATTC TGCCACCGGC CATTCAGGGC ATGGGCAATT CCAGCGGTTT TTCCTTGTAT
CTCGTCGATA ACGGGAACCA CGGCTCGGAA GCACTGTCGA TCGCTGCGAA ACAACTGCTG
GCTCAGGCCA ATAGCAGCGG CGTTATCACC GCCATGCGTC CGAACGACCG CGATGAGGAA
AGTCAGGTCA AGCTTATTCT CGACCAGGAA AAACTGAGCG CCATGGGCGT GACGATTTCC
GACGCCAACT CAATGCTGAC GACCATTTTC GCCGGCACCA ATGTCAATGA CTTCACGCTG
AACAACAAGA TCAAGAAGGT CTATGTCCAG GCCGATGCAC CCTACCGCAT GCAGGCCGAG
GACATAAAAT ATTGGGATGC CCGCAATTCG AGCAATGAGA TGGTCCCCTT CTCATCGTTC
ACGGACGCAA AATGGGTCAA CGGGCTTCCT TCGATTTCGG CTTTCAACGC TGTCACCGCC
TTCTCGCTCG ACGGTTCTGC GGCACCCGGC GTGAGCTCTG GCGACGCAAT GAATGAAGTA
GAACGTCTGG TTTCCAAGAT GGAAGGCGGC TACACCGTCG CTTGGCAGGG CATCTCCTAT
CAGGAAAGAC TGTCAGGCTC GCAGGCGCCC TTGCTCTACG CCTTGTCGGT GTTGATCGTC
TTCCTATGCC TGTCGGCACT CTACGAAAGC TGGTCGATCC CCTTCTCGGT GATCATGGCC
GTGCCGATCG GTGTTCTTGG CGCCGTTGCG GCAGCAACTT TGATGGGGCA GGACAACGAC
GTCTACTTCA AGGTCGGGCT GCTCACCACA ATCGGTCTGG CGGCAAAGAA CGCCATTCTG
ATTGTCGAGT TCGCCAAGGA GAGGCAGGAA CACGGATTGA GCCTGATGGA TGCGACCCTG
GAGGCGGCAA GACTCCGTCT TCGGCCGATC ATCATGACAT CACTCGCCTT CATTCTTGGT
GTCGTTCCGC TGGCAATTGC CACTGGCGCG GGCTCTGCAG CGCAGAATGC AATCGGCATC
GGCGTACTCG GTGGTATGCT TTCTGCAACA CTGCTCGGAA TTTTCTTTGT TCCATCCTTT
TTTGTCATTG TCAGACGTGC TTCAAACCGT GCAAAAGCCA AAGAAGAGCT GTTACAAGCT
GAGCAGAAAC GATAG
|
|---|
| Protein sequence | MSKFFIRRPI FAWVIAIVIM LGGGLAITSL SISQYPEIAP PSVKISATYT GASADTVKKT
VTQIIEDGMT GLDGLTYMTS SSTSGSSSIT LTFDNSIDPD MAQVQVQNKL QLVESQLPSV
VQNLGIEVTK STSSILLVGA LVSTDGKRTS ADLGDIFSAQ IEDQVKRLEG VGNINAFGSA
FAMRIWLDPF KLRKFQLTPA DVTSAIEAQN TQISVGSVGG LPAVEGQQIN VTMTAQSQLT
TVSDFERIIL KVDTSGANVR LSDVARVEIG QESYTSTSRS NRQAASGFAV NLATGANALD
TASRVKAKLA QIAPALPQNV SIIYPYDTTP FVSLSIEKVV HTLIEAIVLV FFVLLIFLQN
LRATFIPMIA VPVVLLGTFG ILALTGYSIN TLTMFAMVLA IGLLVDDAIV VVENVERIMT
EEGLPPLEAT QKSMGEITGA IVGIALVLTA VFVPMAFFGG STGIIYRQFS VTIISAMLLS
AVVALVLTPA LCATILKPID KSHRKTTGPA AWFNRNFDRT TNGYVWSIGH LLRRPLRLLL
IFAVLVGGCA WLFLRLPSSF LPQEDQGVLM TIVQLPNGST SAQTGEVMKK VEDYLLDKES
SVVDSVFAVN GFSFNGSGQN YGLVFAKLKD FDLRKKPDMA ASAIVQRAMG YFMTIREAQV
FPILPPAIQG MGNSSGFSLY LVDNGNHGSE ALSIAAKQLL AQANSSGVIT AMRPNDRDEE
SQVKLILDQE KLSAMGVTIS DANSMLTTIF AGTNVNDFTL NNKIKKVYVQ ADAPYRMQAE
DIKYWDARNS SNEMVPFSSF TDAKWVNGLP SISAFNAVTA FSLDGSAAPG VSSGDAMNEV
ERLVSKMEGG YTVAWQGISY QERLSGSQAP LLYALSVLIV FLCLSALYES WSIPFSVIMA
VPIGVLGAVA AATLMGQDND VYFKVGLLTT IGLAAKNAIL IVEFAKERQE HGLSLMDATL
EAARLRLRPI IMTSLAFILG VVPLAIATGA GSAAQNAIGI GVLGGMLSAT LLGIFFVPSF
FVIVRRASNR AKAKEELLQA EQKR
|
|---|
| |