| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_6027 |
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| Symbol | nodT |
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| ID | 7380854 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 1035056 |
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| End bp | 1036507 |
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| Gene Length | 1452 bp |
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| Protein Length | 483 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643649529 |
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| Product | nodulation protein T precursor |
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| Protein accession | YP_002547760 |
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| Protein GI | 222106969 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTCTCCG TACGCTTAGC TGCGCCCTTT GCAATGCTGC TTCTGTCAGG TTGCGTGATG
GGGCCCGAGC ACAGCCCGCC ACAAACCGCA CTTCCTGCCA AGTTTACTGA GGGCGGCACG
AAGTCTGCGC AAGACACGAC CACAGTTCAG TGGTGGACGG CGTTCAACGA TGCGCGCCTC
AACACGCTGA TCAACCAGGG CGTCAACCAG AATCTCGATG TTCTGCAGGC ACTGGAGCGG
ATCGAGCAGG CGCGCGCGAC CGTCGTCACC TCATCTGCCG GCGGCCTGCC TAGCCTGACA
GGTACGGCAA GCGAAAGCGG CAGCCAGACC AATGGCGGCT ATAATTCTCA GCCTCGGGCC
TGGGAATCCA AAGGCGAGCT TTCCGCGTCC TGGCTTCTCG ATCTCTGGGG TCAATATCGC
CGCGCCAAGC AGAGCGCTAC TGCATCGCTT GATGCCGCCT ATGCCAGCGT CGATACCTCT
CGCCTGACCT ATCTTTCCGA TCTGGCAACA GCCTATATCG ATGCCCGCTA CTATCAGGCT
CGAATCGCAA TCGCCAACGA AGCCGTCAAA TCTCGCCGCG AAACCCTTGC GCTGACCAAG
CTGCAGCTTG AGGCCGGTGC AGCTTCGCGC CTTGATGTCG TGCAGTCCGA AGGTCTGGTC
AACTCGCAGC TGGCGGATAT TCCCGGTTTC GAAGCCAATT TCTATAGCAA TGCCTATCAC
ATCTCGACGC TTCTTGGCCT TCCGGCCTCG ACGCTCATCA ACGATCTGAA GAAGCATGCT
CCTCAGCCGG TTGCCCGTCG TGTGGTTCTG TCGGGAATTC CGGCTGATCT GATCCGCAAC
CGTCCTGACA TTCGCAAGGC CGAACGCGAT CTGGCCGCCG CCGTTTACGA CATCGGCAAT
GCACAGGCGC AGTTGCTGCC TTCGATCACG CTCAGCGGCT CGATTTCGCC GTCCTATGTT
CATTCGAACA CTCATGGCAC AGCCAATACC TGGTCATTCG GCCCGTCGCT CAACCTGCCG
ATTTTCGATG GTGGTACGCT GCGTGCCAAT GTTAAGAACG CCCAGTCGGT CGCTCGTGAA
AAATACCTAG CCTGGAAGCA GACTGTGCTG AACGGCGTCG AAGACGTTGA AAGCGCGCTT
GCTGCCTATA ACCGCGATGC TCGCGCCGTT GCAGCCAATC GCGCCTATGT AAAGTCCTAT
AAGGAAGCGC TCGAACTTTC GACCGCATCC TATAAGGACG GCGCGTCGTC CCTGCTCGAT
GTCCTGGATG CGCAGCGTGA GTTGACCACC GCTCAGGCCA GCCTTGCCGA GTCGATCCAG
CAAATGGCCA ATGACTATGT GACACTGAAT GTGGCCATTG GCGGTGGTTA TAATTTCAAT
GGCAAGGCCC AGGCTATTGA AGCCAATGTC AAGCCTGCGG ATATCCCGCC AGCGCTTGCC
AAAGCCAAGT AA
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| Protein sequence | MVSVRLAAPF AMLLLSGCVM GPEHSPPQTA LPAKFTEGGT KSAQDTTTVQ WWTAFNDARL
NTLINQGVNQ NLDVLQALER IEQARATVVT SSAGGLPSLT GTASESGSQT NGGYNSQPRA
WESKGELSAS WLLDLWGQYR RAKQSATASL DAAYASVDTS RLTYLSDLAT AYIDARYYQA
RIAIANEAVK SRRETLALTK LQLEAGAASR LDVVQSEGLV NSQLADIPGF EANFYSNAYH
ISTLLGLPAS TLINDLKKHA PQPVARRVVL SGIPADLIRN RPDIRKAERD LAAAVYDIGN
AQAQLLPSIT LSGSISPSYV HSNTHGTANT WSFGPSLNLP IFDGGTLRAN VKNAQSVARE
KYLAWKQTVL NGVEDVESAL AAYNRDARAV AANRAYVKSY KEALELSTAS YKDGASSLLD
VLDAQRELTT AQASLAESIQ QMANDYVTLN VAIGGGYNFN GKAQAIEANV KPADIPPALA
KAK
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