Gene Avi_6008 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_6008 
Symbol 
ID7380835 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011988 
Strand
Start bp1009252 
End bp1010265 
Gene Length1014 bp 
Protein Length337 aa 
Translation table11 
GC content61% 
IMG OID643649510 
Producthypothetical protein 
Protein accessionYP_002547741 
Protein GI222106950 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1236] Predicted exonuclease of the beta-lactamase fold involved in RNA processing 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATCAAGC CCGAGGCCCT GCTTTATCCC ACTCCTGCCG GTCTCTATTG CCCGATCGGC 
GATTTCTATG TCGATCCGGT AAGGCCGGTG GCACGGGCGC TGATTACTCA TGGCCATTCC
GACCATGCCC GCGCTGGCCA TGATAAAGTG CTGGCCACGC GGCAGACGCT TGACATCATG
GCGTTGCGCT ACGGCGCGGA CTTTGCCGGG TCTTCGCAGG CGGTCGATTT TGGGGAAACC
GTCACGCTGG ACGGCGTCGC CGTCGGTTTT CATCCAGCCG GACATGTTCT GGGGTCGGCG
CAGATTTCTA TCGAGCGGGA GGGCACCCGC ATTGTCGTTT CCGGCGACTA CAAGCGTCGG
CCCGATGCCA CCTGTGCGGC CTTCGTGCCG GTGCCTTGCG ATGTGTTCAT CACTGAGGCA
ACCTTTGCGC TGCCGGTCTT TCACCATCCC GATCCGGCGC TGGAAATCGG CAAGCTTTTG
CGGTCGCTGG AACAGTTTCC GCAGCGCAGC CATCTTGTCG GGGCCTATGC GCTGGGCAAG
GCGCAGCGGG TGATCTCGCT GATCCGCCAG GCGGGCTATG ACAGACCGAT CTATATTCAT
GGTGCGCTCG CCAAGCTCTG CGACTATTAC CAGAGCCAGG GCATAGAGCT GGGAGAGTTG
CACCCCGCAA CGGTGGAAAG CGGCGGCTCC AACCATTTCG AAGGCGCCAT CGTCATTGGG
CCTCCTTCGG CTTTTGCCGA TCGCTGGGCG CGACGCTTTC ACGACCCATT GCCGATTTTC
GCTTCTGGCT GGATGATGGT GCGGCAAAGG GCCAAGCAGC GTGGCGTCGA ATTGCCACTG
GTGATCTCCG ATCATTGCGA CTGGCCGGAA CTGATCGAGA CGATTAGCGA ATTGCAACCC
GGTGCCGTCT GGGTCACGCA TGGACGCGAA GAGGCTTTGG TGCGCTGGTG CGAGTTGAAC
GGTATCGCCG CCAAGCCGCT GCATCTGGTC GGCTATGAAG ACGAGGGCGA TTGA
 
Protein sequence
MIKPEALLYP TPAGLYCPIG DFYVDPVRPV ARALITHGHS DHARAGHDKV LATRQTLDIM 
ALRYGADFAG SSQAVDFGET VTLDGVAVGF HPAGHVLGSA QISIEREGTR IVVSGDYKRR
PDATCAAFVP VPCDVFITEA TFALPVFHHP DPALEIGKLL RSLEQFPQRS HLVGAYALGK
AQRVISLIRQ AGYDRPIYIH GALAKLCDYY QSQGIELGEL HPATVESGGS NHFEGAIVIG
PPSAFADRWA RRFHDPLPIF ASGWMMVRQR AKQRGVELPL VISDHCDWPE LIETISELQP
GAVWVTHGRE EALVRWCELN GIAAKPLHLV GYEDEGD