Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_6008 |
Symbol | |
ID | 7380835 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011988 |
Strand | - |
Start bp | 1009252 |
End bp | 1010265 |
Gene Length | 1014 bp |
Protein Length | 337 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 643649510 |
Product | hypothetical protein |
Protein accession | YP_002547741 |
Protein GI | 222106950 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1236] Predicted exonuclease of the beta-lactamase fold involved in RNA processing |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATCAAGC CCGAGGCCCT GCTTTATCCC ACTCCTGCCG GTCTCTATTG CCCGATCGGC GATTTCTATG TCGATCCGGT AAGGCCGGTG GCACGGGCGC TGATTACTCA TGGCCATTCC GACCATGCCC GCGCTGGCCA TGATAAAGTG CTGGCCACGC GGCAGACGCT TGACATCATG GCGTTGCGCT ACGGCGCGGA CTTTGCCGGG TCTTCGCAGG CGGTCGATTT TGGGGAAACC GTCACGCTGG ACGGCGTCGC CGTCGGTTTT CATCCAGCCG GACATGTTCT GGGGTCGGCG CAGATTTCTA TCGAGCGGGA GGGCACCCGC ATTGTCGTTT CCGGCGACTA CAAGCGTCGG CCCGATGCCA CCTGTGCGGC CTTCGTGCCG GTGCCTTGCG ATGTGTTCAT CACTGAGGCA ACCTTTGCGC TGCCGGTCTT TCACCATCCC GATCCGGCGC TGGAAATCGG CAAGCTTTTG CGGTCGCTGG AACAGTTTCC GCAGCGCAGC CATCTTGTCG GGGCCTATGC GCTGGGCAAG GCGCAGCGGG TGATCTCGCT GATCCGCCAG GCGGGCTATG ACAGACCGAT CTATATTCAT GGTGCGCTCG CCAAGCTCTG CGACTATTAC CAGAGCCAGG GCATAGAGCT GGGAGAGTTG CACCCCGCAA CGGTGGAAAG CGGCGGCTCC AACCATTTCG AAGGCGCCAT CGTCATTGGG CCTCCTTCGG CTTTTGCCGA TCGCTGGGCG CGACGCTTTC ACGACCCATT GCCGATTTTC GCTTCTGGCT GGATGATGGT GCGGCAAAGG GCCAAGCAGC GTGGCGTCGA ATTGCCACTG GTGATCTCCG ATCATTGCGA CTGGCCGGAA CTGATCGAGA CGATTAGCGA ATTGCAACCC GGTGCCGTCT GGGTCACGCA TGGACGCGAA GAGGCTTTGG TGCGCTGGTG CGAGTTGAAC GGTATCGCCG CCAAGCCGCT GCATCTGGTC GGCTATGAAG ACGAGGGCGA TTGA
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Protein sequence | MIKPEALLYP TPAGLYCPIG DFYVDPVRPV ARALITHGHS DHARAGHDKV LATRQTLDIM ALRYGADFAG SSQAVDFGET VTLDGVAVGF HPAGHVLGSA QISIEREGTR IVVSGDYKRR PDATCAAFVP VPCDVFITEA TFALPVFHHP DPALEIGKLL RSLEQFPQRS HLVGAYALGK AQRVISLIRQ AGYDRPIYIH GALAKLCDYY QSQGIELGEL HPATVESGGS NHFEGAIVIG PPSAFADRWA RRFHDPLPIF ASGWMMVRQR AKQRGVELPL VISDHCDWPE LIETISELQP GAVWVTHGRE EALVRWCELN GIAAKPLHLV GYEDEGD
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