| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_6007 |
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| Symbol | |
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| ID | 7380834 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 1007636 |
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| End bp | 1009255 |
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| Gene Length | 1620 bp |
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| Protein Length | 539 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 643649509 |
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| Product | ATP-dependent DNA ligase |
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| Protein accession | YP_002547740 |
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| Protein GI | 222106949 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGATGCGCG CCTTTGCTAC GCTTCTCGAC CGCCTCGTCC TGACCCCGAG CCGCAATGGC
AAGCTCAAGC TGTTGGCCGA TTACTTCGCC AGCGTCCCGG ACCCGGACCG GGGCTATGCG
CTGGGCGTTC TGGCCGGAAC GCTCGATCTG AAGACGGTCA AACCAGCCCT CCTGAAAGAA
CTCGTGCTGG AGCGGATGGA CCCAGTTCTC TTCGGTTATT CCTATGATTA TGTCGGCGAT
CTCGCCGAAA CCATTTCGCT GGTCTGGGAT CAGGACCGCG GTGAAAAGGC CGAAATAGCC
GAACCAAGCC TTGGCGAGGT CGTCGCCCTC ATGCAATCAC TTGGCCGCAC CCAGGTGCGG
GGAGCCGTGC GCGACCTGCT CGACCAGCTC GACACGTCCG GCCGCTTTGC CTTTCTCAAA
CTGGCGACCG GCGGCTTGCG AATCGGGGTG TCGGCAAGGC TTGCCAAACA GGCGCTTTCC
GAGATGTCAG GCAAGGATGT CGGTGAGATC GAGACGCTGT GGCACGGGCT GGAGCCACCC
TATGAGAGCC TGTTTGCCTG GCTTGAGGGC GGCGCAGACA AGCCTGTGCT GGCGACACCG
GCAATCTTTC ATTCGGTCAT GCTGTCCACT CCGGTCGGCA ATGGTGATCT GGATGGTCTC
GATCCCGCCG ATTTCGCCGC CGAGTGGAAA TGGGACGGTA TCCGGGTGCA GCTTTCGCGC
CATGGAGACA CCTGCCGCCT CTATTCCCGC TCCGGCGACG ACATTTCCGG GGCTTTTCCC
GATATTGTCG CGGCAGCGAA TTTCGATGGG GTGATCGATG GCGAATTGCT GGTCGGCGGC
ACCGCCCGCT CCAACCAGCC GACCCGCAGC TTTTCCGATC TTCAGCAACG GCTGAACCGC
AAAAGCGTCA CGACGAAAAT GCTCAGCGAT TATCCGGCCT TCATCCGCGC CTATGATCTG
CTGTTTACCG GCGACCAGGA TGTGCGAAAC CTCGGCTATG AGGTACGCCG GGGGTTACTT
GCAGAGATTG TCGAAAAAGC CCCCGCCACC CGATTCGATC TCTCGCCGCT GATCTCGTTT
TCCAACTGGG ATGAGTTGGA CGCGCTGCGG CACGCCCCGC CCGATCCGGT CATCGAAGGG
GTAATGATCA AGCGCCGCGA CAGCATCTAC CAGGCGGGGC GCGCCAAAGG GCCGTGGTTC
AAGTGGAAAA AGCAGCCGCT GAATGTGGAT GCGGTGCTGA TGTATGCCCA GCGCGGCCAT
GGCAAGCGCT CCAGCTATTA TTCCGATTTT ACCTTCGGGG TCTGGATGCA GATGCCGGAA
GGCGGCAGCC AACTGGTGCC GGTGGGCAAG GCCTATTTCG GCTTTACCGA TCAGGAGCTG
GAAATTCTCG ATAAATATGT GCGCAACAAT ACCATCGACC GGTTCGGACC CGTGCGCTCA
ATCCGCGCCG AGCCGGATCA TGGGTTTGTG GTGGAGGTGG CGTTTGAAGG GCTGAACCGG
TCCACCCGGC ACAAATCCGG CGTCGCCATG CGCTTTCCCC GGATTTCGCG GCTGCGGAGC
GACAAACTTC CGCGTGATGC TGACCGCCTG GAAACGCTGC TGCATATGCT GCCAGCATGA
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| Protein sequence | MMRAFATLLD RLVLTPSRNG KLKLLADYFA SVPDPDRGYA LGVLAGTLDL KTVKPALLKE
LVLERMDPVL FGYSYDYVGD LAETISLVWD QDRGEKAEIA EPSLGEVVAL MQSLGRTQVR
GAVRDLLDQL DTSGRFAFLK LATGGLRIGV SARLAKQALS EMSGKDVGEI ETLWHGLEPP
YESLFAWLEG GADKPVLATP AIFHSVMLST PVGNGDLDGL DPADFAAEWK WDGIRVQLSR
HGDTCRLYSR SGDDISGAFP DIVAAANFDG VIDGELLVGG TARSNQPTRS FSDLQQRLNR
KSVTTKMLSD YPAFIRAYDL LFTGDQDVRN LGYEVRRGLL AEIVEKAPAT RFDLSPLISF
SNWDELDALR HAPPDPVIEG VMIKRRDSIY QAGRAKGPWF KWKKQPLNVD AVLMYAQRGH
GKRSSYYSDF TFGVWMQMPE GGSQLVPVGK AYFGFTDQEL EILDKYVRNN TIDRFGPVRS
IRAEPDHGFV VEVAFEGLNR STRHKSGVAM RFPRISRLRS DKLPRDADRL ETLLHMLPA
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