| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5916 |
|---|
| Symbol | |
|---|
| ID | 7381007 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011988 |
|---|
| Strand | + |
|---|
| Start bp | 924721 |
|---|
| End bp | 925755 |
|---|
| Gene Length | 1035 bp |
|---|
| Protein Length | 344 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 643649429 |
|---|
| Product | dipeptidase |
|---|
| Protein accession | YP_002547666 |
|---|
| Protein GI | 222106875 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2355] Zn-dependent dipeptidase, microsomal dipeptidase homolog |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACACAGA CCGTTCCCGT TTTCGATGGC CATAATGATG TGCTGCTGCG GCTGCGCCGT
TCTGGCCGTC CCCATCCCTA CCAGGATTTT TTGCAGGGCG GCGAGGCCGG GCATATTGAT
TTGCCCAAGG CGCGCCAAGG GGGACTGGCC GGTGGACTTT GTGCCGTATT CATTCCCTCG
CCAAGCTTCA AACCTGATGA CAACGGGGAT TTCCAGGCCC CGGCCCAGCC GGAAGCGCTG
AATGAGACGT TGGCCATGGC CCGGCTGCTG TTCGAAATCG AGGCGAATTC GGCTGGTCGC
GTCAAGGTCT GCCGCAGTGC CGCCGATATA CGGCATTCTC TCGCCAATGA AATCTTTGCG
GCGGTTTTTC ACATCGAAGG CGTTGAGGCC ATCGCTGCCG ATCTCGATGC CCTTTATGTG
CTGCATCAGG CGGGGCTCCG CTCGCTCGGT CCTGTCTGGA GCCGGCCGAA TATCTTTGCC
CATGGCGTTC CCTTCCGCTT TCCATCCTCC TCGGATATCG GCCCCGGTCT GACGGATGCT
GGCAAGGACC TGATCCGCGC CTGCAATGAG TTGAAGATCA TGGTCGATCT CTCTCATATG
AATGAACAGG GCTTCTGGGA TATCGCCGGT CTTTCCAATG CACCACTTGT CGCTTCCCAT
TCCAACGCCC ACGCGCTTTG CCCTCATAGC CGCAACCTCA CCGACAGGCA GTTGGATGCG
ATCCGTGACA GTGGTGGTTT GGTGGGTATC AATTTCGGGG TGATTTTCCT GCGCGAAGAC
GGTCAGCGCA ATCTCGATAC ACCGCTGGAT GTGCTCATCG ACCATATCGA TTATATCGTG
ACGCGCATCG GCATCGACCA TGTCGCACTC GGCTCAGACT TCGATGGCAC AACCGTTCCC
GCCGCCCTCA AGGACGCAAC TGGTCTTCCC TTGATCGTCC AGGGGCTGGA AGCGCGGGGC
TATGATGCGA CCTCGATTGC CAAGATCTGC CATGGCAATT GGATTTCGGT GCTGGAGCGA
ACCTGGGGTG CTTAG
|
|---|
| Protein sequence | MTQTVPVFDG HNDVLLRLRR SGRPHPYQDF LQGGEAGHID LPKARQGGLA GGLCAVFIPS
PSFKPDDNGD FQAPAQPEAL NETLAMARLL FEIEANSAGR VKVCRSAADI RHSLANEIFA
AVFHIEGVEA IAADLDALYV LHQAGLRSLG PVWSRPNIFA HGVPFRFPSS SDIGPGLTDA
GKDLIRACNE LKIMVDLSHM NEQGFWDIAG LSNAPLVASH SNAHALCPHS RNLTDRQLDA
IRDSGGLVGI NFGVIFLRED GQRNLDTPLD VLIDHIDYIV TRIGIDHVAL GSDFDGTTVP
AALKDATGLP LIVQGLEARG YDATSIAKIC HGNWISVLER TWGA
|
|---|
| |