Gene Avi_5853 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_5853 
Symbol 
ID7380631 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011988 
Strand+ 
Start bp871393 
End bp872058 
Gene Length666 bp 
Protein Length221 aa 
Translation table11 
GC content62% 
IMG OID643649381 
Producttranscriptional regulator GntR family 
Protein accessionYP_002547618 
Protein GI222106827 
COG category[K] Transcription 
COG ID[COG1802] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones4 
Plasmid unclonability p-value0.110749 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCAGACG AGGATGAAAG CCTTTCGTTG GCGGAGCGAC TGGTAACAAA AATCCGCGAT 
CAACTGATCG CCGGGGAGTT GAAGCCGGGC CAGCGGCTGT CGGAGGCAGC ACTCAGCACC 
CGGCTCGACG TGTCGCGCAA TTCGCTGCGG GAAGCCTTTC GGCTGCTGAC CAAGGATGGC 
TTGCTGCGCC ACGAGGCCAA TCGCGGTGTG TTTGTCGCCA CTCCCAGCAT GGCCTCGATC 
ATCGATATCT ACAGGGTGCG ACGGCTGGTG GAGTGCAAGG CGCTGGAGCA GGCGTTTTCC 
GGACATCCTG CCGTCCGGCG GATGCGGTTG GCGGTGGAAA CCGCACGGGC CTGTCGCAAT 
AGCCGTGACT GGCTGGGGGT CGGCAGCGCC AATATGCAGT TTCATGCCGC TATCGTCGAT 
CTCGCCGACA GCAGCCGTCT CAGCGACTTC TATACGCGAA TCGCTGCGGA ACTACGATTG 
AGCTTCGGCC TGCTGGACGA TCCTGAACTG CTGCACGCGC CCTTCGTGGA GCTGAATGGC 
GAAATCCTCG GCCTGCTGGA AGCCGACAAG GCGAAAGAGG CGGCTGCCGC TCTCGATTCT 
TATCTGGTCC GCTCGGAGCG CACGGTGTTG GCAGCATTTG CCCGCGCCAC GGCGGATGCT 
GGCTAA
 
Protein sequence
MADEDESLSL AERLVTKIRD QLIAGELKPG QRLSEAALST RLDVSRNSLR EAFRLLTKDG 
LLRHEANRGV FVATPSMASI IDIYRVRRLV ECKALEQAFS GHPAVRRMRL AVETARACRN 
SRDWLGVGSA NMQFHAAIVD LADSSRLSDF YTRIAAELRL SFGLLDDPEL LHAPFVELNG 
EILGLLEADK AKEAAAALDS YLVRSERTVL AAFARATADA G