| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5845 |
|---|
| Symbol | |
|---|
| ID | 7380626 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011988 |
|---|
| Strand | - |
|---|
| Start bp | 864720 |
|---|
| End bp | 866456 |
|---|
| Gene Length | 1737 bp |
|---|
| Protein Length | 578 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 643649376 |
|---|
| Product | biotin carboxylase |
|---|
| Protein accession | YP_002547613 |
|---|
| Protein GI | 222106822 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG4770] Acetyl/propionyl-CoA carboxylase, alpha subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.249832 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAAG TGCTGATCGC CAACCGGGGC GAAATCGCCG TTCGCATCAT CCGCGCCTGT
CGCGATTACG GGCTGCAATC CGTCGCGGTC TATGCCGATC CGGATATCGA CGCGCTGTTC
GTGCAGCTTG CCGATGAAGC CTATGGGCTG TCCGGTGCCA AGCCGTCGGA GACCTATCTC
GATATCGCCA AGCTGATCGA CATTGCCAAA CGATCCGGCG CGGACGCCGT CCATCCCGGC
TACGGCTTTC TGTCGGAGCG CTCCGAATTT GCGCGTGCGG TGATCGATGC CGGTCTGACC
TGGATCGGCC CTGATCCGCA AGTCATCGAA GCGCTAGGCG ACAAGGTTGA GGCGCGGCGG
ATTGCCACCA GCGTCGGCGC GCCACTGGTG GCGGGCAGCG ATGGGCCGGT GGACACCGCC
GAGGAGGTGA TTGCCTTTGC TGAGCGCCAC GGCCTGCCTG TTGCCATCAA GGCTGCCCAT
GGCGGCGGTG GGCGTGGCTT GAAAGTCGCC TGGAAAATGG AAGAGATTCC GGAGCTTTAC
GCATCGGCAG TCCGCGAGGC GACCGTCGCC TTTGGCCGTG GCGAATGCTT TTTGGAGCGC
TTCCTCGACC GGCCCCGCCA TATCGAAGCG CAGGTGATTG CCGATAAGCA CGGCACCGTG
CTGGTGCTCG GCACCCGCGA TTGCTCCTTG CAGCGGCGAA ACCAGAAACT GGTGGAAGAG
GCCCCGGCAC CCTTCCTCAC CGATACGCAG CGCCAATCCA TCCATGATGC CGCCAAGGCG
ATCTGCGCAG CAGCGGGCTA TAGCGGCGCG GGAACGGTGG AATTCCTGCT GGGCGTTGAC
GGTACGATTT CCTTTCTGGA AGTGAACACC CGGCTACAGG TCGAGCATCC GGTGACGGAA
GAAACCACCG GCATCGATCT CGTCATCGAA CAGTTCCGCA TTGCAGAAGG TCTGCCCTTG
GCGATCACGC AAACACCCGC GCCACGCGGT CATTCCATCG AGTTTCGCAT CAATGCCGAA
GATCCGGGCC GTGGCTTTCT GCCAACCCCG GGCACGATCA CCCGGTTTAC GGCCCCGTCC
GGCCCCGGCG TGCGGCTCGA TAGTGGTGTG GATACCGGAT CCACCATTCC CGGCGTCTAT
GATTCGCTGA TGGCCAAGCT GATCGTCACC GGTGCCACCC GCGAGCAGGC CCTGCAAAGG
GCAAGACGCG CCCTGAAGGA ATTCCAGATC GAAGGCGTGG CAACCGTGCT ACCCTTCCAC
CGTGCCGCCA TTGAAACCGT CGATTTCATC GGCACTGATG GTTTCAAGGT CCATACCCGT
TGGATCGAGA CCGATTTCGC CGCCATGCCT GAAGCAGCCA TGCGACCAGA GCCAGCCATC
GACACCTCGC TGATCCGCAC CCATGTGGAA ATCGATGGCA AGCGCCATGC CCTCGGCATT
CCGGCCCAGC TTCTCGCCGG GCTTGGCAGT CTGTCAGTCA ATGCTGGACA GACAGCGGCA
GGCGATACAG GAAACACGCC GGAAAAAGGC GCCATCACAG CCCCGGTATC CGGCACGGTA
CAATCATTCA AGGTGAAGGA TGGAGATCGG GTTGCGGCAG GTGATCTTCT CGCCGTTATG
GAGGCGATGA AGATGGAGAC GCAGATCACG GCGACAACAG CTGGAACCGT CAGTCTCGTC
GCAAGCGAAG GCGACTATCT GGCTGCGGGA AGCCTGCTGT TGAAGATTGT CGCGTAA
|
|---|
| Protein sequence | MKKVLIANRG EIAVRIIRAC RDYGLQSVAV YADPDIDALF VQLADEAYGL SGAKPSETYL
DIAKLIDIAK RSGADAVHPG YGFLSERSEF ARAVIDAGLT WIGPDPQVIE ALGDKVEARR
IATSVGAPLV AGSDGPVDTA EEVIAFAERH GLPVAIKAAH GGGGRGLKVA WKMEEIPELY
ASAVREATVA FGRGECFLER FLDRPRHIEA QVIADKHGTV LVLGTRDCSL QRRNQKLVEE
APAPFLTDTQ RQSIHDAAKA ICAAAGYSGA GTVEFLLGVD GTISFLEVNT RLQVEHPVTE
ETTGIDLVIE QFRIAEGLPL AITQTPAPRG HSIEFRINAE DPGRGFLPTP GTITRFTAPS
GPGVRLDSGV DTGSTIPGVY DSLMAKLIVT GATREQALQR ARRALKEFQI EGVATVLPFH
RAAIETVDFI GTDGFKVHTR WIETDFAAMP EAAMRPEPAI DTSLIRTHVE IDGKRHALGI
PAQLLAGLGS LSVNAGQTAA GDTGNTPEKG AITAPVSGTV QSFKVKDGDR VAAGDLLAVM
EAMKMETQIT ATTAGTVSLV ASEGDYLAAG SLLLKIVA
|
|---|
| |