| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5774 |
|---|
| Symbol | |
|---|
| ID | 7380732 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011988 |
|---|
| Strand | - |
|---|
| Start bp | 802548 |
|---|
| End bp | 803546 |
|---|
| Gene Length | 999 bp |
|---|
| Protein Length | 332 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 643649322 |
|---|
| Product | transcriptional regulator LysR family |
|---|
| Protein accession | YP_002547559 |
|---|
| Protein GI | 222106768 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTCTAA TGGTAATCAT CAATCCAACT GATGGAATGT CCGCCATGTC CGCACCTCTC
GATACAGACC AGTTGCAAAC CTTCATCGCC ATCGTCGATA CCGGCAGTTT TACCAAGGCG
GCAGGGCGGG TCTTCAAGAC CCAATCAGCC GTTTCCATGC AGATGCGCCG CCTGGAAGAG
CGGATCGGCA AGCAATTGTT CATCAAGGAC GGGCGTGGCA ACCGGCTGAC CGCAGAAGGC
GAAAAACTGC TGAACTATGC CCGGCGGATC GTCCGGCTGA ACAGCGAGGC GATTGCGGCT
TTCGACGACA ACCGGTTGGA AGGTACGTTG CGGATCGGCA CGCCGGATGA TTATGCCGAC
CGCTACATGC CGGAAATTAT TGGCCGTTTC GCCAAGACCC ATCCCAATGT AGAGCTTTAC
ATCGTTTGCG AACCATCCTC CGACCTGGCC GAAAAAATGG CCAGAGGTGA GTTAGACATC
GCACTTGTGA CCCATAACCC GGCGACCAGA CAATCCGACG TGATGCGCAC CGAGCCGCTT
TGCTGGGTGG CTTCGGCCAA CCATCCCTTG CGCGATGATG CGCCTGTACC GCTTGCGGTT
GGACGGCGCG ATTGCAATTG GCGGCAACTG GCCTGTTCGG CGCTCGATGC CGACGGGCGC
GACTATCAGA TCCTGTTCAC CAGTTGGTCA TCGACCGTGG TCGCCGCCGC AGTGCTGGCT
GGCTTGGCCG TTTCTGTTTT GCCGGAATCG GCGCTGCGAA CCGGTATGAA AGTGCTGGGC
CAGTTGGATG GCTTTCCGCC ACTGCCGCCC GTGCAGATCG GCATCATGAA ACGACCCGGA
ATGTCACCCT CGCTGATGAA CGCCATCACC GACCATATCG CCGCCTGCCT TGACAATATC
AACCCGACGG CCATCGAAGA CGACATGGAC GGAGAAACGA AAACCTATTC CCGTTACTAT
CCGCGCCTGC GGGCGGGACA TATGATCCCC GGCTGGTAA
|
|---|
| Protein sequence | MFLMVIINPT DGMSAMSAPL DTDQLQTFIA IVDTGSFTKA AGRVFKTQSA VSMQMRRLEE
RIGKQLFIKD GRGNRLTAEG EKLLNYARRI VRLNSEAIAA FDDNRLEGTL RIGTPDDYAD
RYMPEIIGRF AKTHPNVELY IVCEPSSDLA EKMARGELDI ALVTHNPATR QSDVMRTEPL
CWVASANHPL RDDAPVPLAV GRRDCNWRQL ACSALDADGR DYQILFTSWS STVVAAAVLA
GLAVSVLPES ALRTGMKVLG QLDGFPPLPP VQIGIMKRPG MSPSLMNAIT DHIAACLDNI
NPTAIEDDMD GETKTYSRYY PRLRAGHMIP GW
|
|---|
| |