Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_5753 |
Symbol | tphA |
ID | 7381634 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011988 |
Strand | - |
Start bp | 781855 |
End bp | 783201 |
Gene Length | 1347 bp |
Protein Length | 448 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 643649306 |
Product | MFS permease |
Protein accession | YP_002547543 |
Protein GI | 222106752 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG2223] Nitrate/nitrite transporter |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCCCCCA TCAGCACTCC GGCATCGCCT CCCCGTCAGC TTAACCGGGC CGATTTTCGC ACGCTTGGGC TTTCAGCCCT GGGCGGGGCC TTGGAATTCT ACGATTTCAT CATCTTCGTG TTTTTCGCGG GTGTAATCGG CAAGCTGTTT TTCCCGGCCA ACATGCCGGA CTGGCTGGTG ACGATCCAGA CCTTCGGAAT TTTTGCTGCA GGCTATCTGG TGCGGCCCCT GGGCGGGTTA ATCCTGGCCC ATTTCGGTGA TGTGTTTGGC CGCAAGAAAG TCTTTGCCTT TTCCATCCTG TTGATGGCGC TGTCTACCCT TGGCATGGCT GCGATGCCGA CCTATGCCTC CATTGGCATA GCCGCACCCG TGTTGCTGAT TATCATGCGG CTGTTGCAGG GCGTTGCCAT CGGCGGAGAA GTGCCGGGTG CCTGGACCTT CGTCTCGGAA CATGTGCCAT TTCGCCGGGT CGGCTTTGCC TGCGGTTTTC TCTGCTCTGG CCTGACACTC GGCATTCTGC TGGGTTCGTT GATCGCAACC GTCATCAATT CGATGTTCAC GCCGGAAGAT GTTGCCGCCT ATGCCTGGCG CATCCCGTTC TTCCTCGGTG GTTTCTTCGG CCTTGTCGCC GTCTACCTGC GCCGCTGGCT TCAGGAAACC CCTGTTTTTG CTGAGATGCG TCAGGCGCGA ACGACAGTGA TGGAACTGCC GCTGAAAACC GTGCTGCGCG ATTATCCCGC TGCTGTCATC ATTTCCATGG CTTTGACGTG GGTGCTTGCC GCCTGCCTCG TCGTCACCAC GCTGATGACT GCCACGCTCC TGCAAAAACT CTATGGCTAC AGCGCCCAGA TCGCGCTGTC CGCCACCAGC TTTGGCACAT TGTTCCTGAT TTTCAGCACC GCTGCATCAG GCGCGATTGT CGATAAGGTC GGCTCCGGGC GGTTTTTAAT GGTTGGGAGC GTATTTTTGG CAGCAGCAAC CTTTGCTTTC TACACCTATG CAAGCGTTTC GGTTCCGGTC CTGTTTGTGC TCTATGCCGT AATGGGCCTT TCCGTGGGCA TTGTCGGGGC CGTGCCTTAC GTGATGGTGC GCGCCTTTCC CGCACCTGTG CGCTTCACCG GTCTGTCATT TTCCTACAAT GTCTCCTACG CGATTTTCGG CGGATTGACA CCGATTGCGG TCGCCAGCCT GCTGCCAATC AACCCGATGG CACATGCCTA TTATCTGCTG TTCATCGCCG CCCTCGCCTT TGTGCTTGGC GTCTATCTGA CGCTGAAAGG CGATGGGATA GAGGCGAAGG CTGGGATCGA GGAACTGGCA AGCCGCCAGA CAACAGCAAC GCTTTAA
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Protein sequence | MSPISTPASP PRQLNRADFR TLGLSALGGA LEFYDFIIFV FFAGVIGKLF FPANMPDWLV TIQTFGIFAA GYLVRPLGGL ILAHFGDVFG RKKVFAFSIL LMALSTLGMA AMPTYASIGI AAPVLLIIMR LLQGVAIGGE VPGAWTFVSE HVPFRRVGFA CGFLCSGLTL GILLGSLIAT VINSMFTPED VAAYAWRIPF FLGGFFGLVA VYLRRWLQET PVFAEMRQAR TTVMELPLKT VLRDYPAAVI ISMALTWVLA ACLVVTTLMT ATLLQKLYGY SAQIALSATS FGTLFLIFST AASGAIVDKV GSGRFLMVGS VFLAAATFAF YTYASVSVPV LFVLYAVMGL SVGIVGAVPY VMVRAFPAPV RFTGLSFSYN VSYAIFGGLT PIAVASLLPI NPMAHAYYLL FIAALAFVLG VYLTLKGDGI EAKAGIEELA SRQTTATL
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