Gene Avi_5701 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_5701 
Symbol 
ID7381589 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011988 
Strand
Start bp726718 
End bp727623 
Gene Length906 bp 
Protein Length301 aa 
Translation table11 
GC content60% 
IMG OID643649261 
Product5-dehydro-4-deoxyglucarate dehydratase 
Protein accessionYP_002547498 
Protein GI222106707 
COG category[E] Amino acid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0329] Dihydrodipicolinate synthase/N-acetylneuraminate lyase 
TIGRFAM ID[TIGR03249] 5-dehydro-4-deoxyglucarate dehydratase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAACCGA ATGAACTGAA ACGTGCACTG GGCGCAGGCT TGCTGTCCTT TCCCGTAACC 
CCTTTCGATG ACAAGGGCGA GTTCAACCCG GATGTCTATG GCGCGCATAT CGATTGGCTT
TCGGGCTATG ACGCGACGGT ACTGTTTGCC GCTGGCGGCA CCGGCGAAAT GTTCTCGCTG
TCGCCGGATG AAATTCCAAA TATTGTTGCC ACCGCCAAGG CGGCATCGAA TGGCGTGCCT
ATCGTGGGTG GCTGCGGCGG TGGCACGAGG GTTGCCGTGG AAATTGCCAA GGGCATCGAA
AAGGCTGGGG GCGATGGCAT TCTTCTGCTG CCGCAATATC TGATCGATGC GCCGCAGGCG
GGCCTCTATG CCCATGTCAA GGCGGTCTGT GATGCGGTTG GCTTTGGCGT CACCGTCTAC
AACCGCGACA ATTGCGTGCT TCAGACCGAA ACCATCCAGC GCCTGGCCGA TGACTGCCCC
AATCTGATCG GTTTCAAGGA CGGTACCGGA GAACTTGGCC TGGTGCGCCG CATCACCGCG
ACGCTGGGCG ACCGGCTGAC CTATATCGGC GGCATGCCAA CGGCGGAATT GTTTGCCGAG
GCCTATCTGG GTGCGGGTTT CTCCACCTAT TCGTCGGCTG TCTTCAATTT CGTGCCGCAA
CTGGCCTGCG ACTTCTACAA GGCGCTGCGG GCTGGCGACC GGGCGACCTG CGAAAACATT
CTCAACCGGT TCTTCTTCCC CTTCATGGAC TTGCGCAGTC GCCAAAAGGG CTATGCGGTC
GCGGCCATCA AGGCGGGCGT TCGCCTTCAG GGCTTTGCCG CCGGTTCGGT GCGCCCGCCC
CTGACGGATT TGACCTCGCA AGAAGTGGAT ATTCTGGCCG GGCTGATCGA ACCCTGGAAG
CAGTGA
 
Protein sequence
MEPNELKRAL GAGLLSFPVT PFDDKGEFNP DVYGAHIDWL SGYDATVLFA AGGTGEMFSL 
SPDEIPNIVA TAKAASNGVP IVGGCGGGTR VAVEIAKGIE KAGGDGILLL PQYLIDAPQA
GLYAHVKAVC DAVGFGVTVY NRDNCVLQTE TIQRLADDCP NLIGFKDGTG ELGLVRRITA
TLGDRLTYIG GMPTAELFAE AYLGAGFSTY SSAVFNFVPQ LACDFYKALR AGDRATCENI
LNRFFFPFMD LRSRQKGYAV AAIKAGVRLQ GFAAGSVRPP LTDLTSQEVD ILAGLIEPWK
Q