Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_5701 |
Symbol | |
ID | 7381589 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011988 |
Strand | - |
Start bp | 726718 |
End bp | 727623 |
Gene Length | 906 bp |
Protein Length | 301 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 643649261 |
Product | 5-dehydro-4-deoxyglucarate dehydratase |
Protein accession | YP_002547498 |
Protein GI | 222106707 |
COG category | [E] Amino acid transport and metabolism [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0329] Dihydrodipicolinate synthase/N-acetylneuraminate lyase |
TIGRFAM ID | [TIGR03249] 5-dehydro-4-deoxyglucarate dehydratase |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAACCGA ATGAACTGAA ACGTGCACTG GGCGCAGGCT TGCTGTCCTT TCCCGTAACC CCTTTCGATG ACAAGGGCGA GTTCAACCCG GATGTCTATG GCGCGCATAT CGATTGGCTT TCGGGCTATG ACGCGACGGT ACTGTTTGCC GCTGGCGGCA CCGGCGAAAT GTTCTCGCTG TCGCCGGATG AAATTCCAAA TATTGTTGCC ACCGCCAAGG CGGCATCGAA TGGCGTGCCT ATCGTGGGTG GCTGCGGCGG TGGCACGAGG GTTGCCGTGG AAATTGCCAA GGGCATCGAA AAGGCTGGGG GCGATGGCAT TCTTCTGCTG CCGCAATATC TGATCGATGC GCCGCAGGCG GGCCTCTATG CCCATGTCAA GGCGGTCTGT GATGCGGTTG GCTTTGGCGT CACCGTCTAC AACCGCGACA ATTGCGTGCT TCAGACCGAA ACCATCCAGC GCCTGGCCGA TGACTGCCCC AATCTGATCG GTTTCAAGGA CGGTACCGGA GAACTTGGCC TGGTGCGCCG CATCACCGCG ACGCTGGGCG ACCGGCTGAC CTATATCGGC GGCATGCCAA CGGCGGAATT GTTTGCCGAG GCCTATCTGG GTGCGGGTTT CTCCACCTAT TCGTCGGCTG TCTTCAATTT CGTGCCGCAA CTGGCCTGCG ACTTCTACAA GGCGCTGCGG GCTGGCGACC GGGCGACCTG CGAAAACATT CTCAACCGGT TCTTCTTCCC CTTCATGGAC TTGCGCAGTC GCCAAAAGGG CTATGCGGTC GCGGCCATCA AGGCGGGCGT TCGCCTTCAG GGCTTTGCCG CCGGTTCGGT GCGCCCGCCC CTGACGGATT TGACCTCGCA AGAAGTGGAT ATTCTGGCCG GGCTGATCGA ACCCTGGAAG CAGTGA
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Protein sequence | MEPNELKRAL GAGLLSFPVT PFDDKGEFNP DVYGAHIDWL SGYDATVLFA AGGTGEMFSL SPDEIPNIVA TAKAASNGVP IVGGCGGGTR VAVEIAKGIE KAGGDGILLL PQYLIDAPQA GLYAHVKAVC DAVGFGVTVY NRDNCVLQTE TIQRLADDCP NLIGFKDGTG ELGLVRRITA TLGDRLTYIG GMPTAELFAE AYLGAGFSTY SSAVFNFVPQ LACDFYKALR AGDRATCENI LNRFFFPFMD LRSRQKGYAV AAIKAGVRLQ GFAAGSVRPP LTDLTSQEVD ILAGLIEPWK Q
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