Gene Avi_5660 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_5660 
Symbol 
ID7381131 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011988 
Strand+ 
Start bp683830 
End bp684513 
Gene Length684 bp 
Protein Length227 aa 
Translation table11 
GC content59% 
IMG OID643649225 
Producttranscriptional regulator GntR family 
Protein accessionYP_002547462 
Protein GI222106671 
COG category[K] Transcription 
COG ID[COG1802] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones6 
Plasmid unclonability p-value0.495941 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATCAGC CGAGGGTGCG CGAACTTGTT CGTGCCGGCA ACACGGTCGA ACAGCTGGTG 
CGCGCCATTG CCGACCTGAT TATCGTCGGT GATTTGCAGC CGGATGATAA ACTGGATGAA 
GGATCGCTTG CCGCCCGCTT TGAGGTGTCA CGCACGCCGG TGCGCGAGGC GCTTCGACAA 
TTGTGCGCCA TGGGTCTGGT GGAGCGCAAG CCGAACAAGA GCGCTGTTGT CACCAACGTC 
ACCGGCGGGT TTCTGACCTC GATGTTCGAG GCGATGGCGG AGCTTGAAGG GATGTGCGCC 
AGACTTGCAG CAGAGCGCAT GACGCTGGAG GAGCGCCGGT TGCTGGAGCG GATGCATCGC 
GATTCAATCC GCATCGTCCA AGCGGGGCAG ACGGAGGATT ATTCCGCCTA TAATATCGAG 
TTTCACAACC GGATCTATCA GGGCGCCCAT AACCAGCATA TTCTGGAACT GGTGACGCAA 
ACCCGGTCGC GGCTGGCACC GTTTCGCCGC GCCCAGTTTC GCTTGACGGG CCGCTTGTCT 
CTGTCTTTCC AGGAACATGA AGCCATCGTC AATGCCATCC TGCGCGGTGA AAAGACTGCC 
GCTGCCGAAG CGGCCTATCG CCATGTCGAA ATTGTCGGCG ATGCCAGCAG CACATTGACC 
CAGCATACGG TTGGCAGGGA TTGA
 
Protein sequence
MNQPRVRELV RAGNTVEQLV RAIADLIIVG DLQPDDKLDE GSLAARFEVS RTPVREALRQ 
LCAMGLVERK PNKSAVVTNV TGGFLTSMFE AMAELEGMCA RLAAERMTLE ERRLLERMHR 
DSIRIVQAGQ TEDYSAYNIE FHNRIYQGAH NQHILELVTQ TRSRLAPFRR AQFRLTGRLS 
LSFQEHEAIV NAILRGEKTA AAEAAYRHVE IVGDASSTLT QHTVGRD