| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5643 |
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| Symbol | |
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| ID | 7381117 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 668839 |
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| End bp | 669705 |
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| Gene Length | 867 bp |
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| Protein Length | 288 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 643649211 |
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| Product | ABC transporter |
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| Protein accession | YP_002547448 |
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| Protein GI | 222106657 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00533049 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCACGA CCGTGACAAT CTCAAAGCCG TCTACCAGGC GGCTCACCCG TCTTTTTCTT
CGCCCGACTT TGCTGATCGG CGGGCTGATT ATAATCCTGC TGGTGGCGAT TGCCCTTCTG
TCGCTGGTCT GGACACCGCT GCCGCCGACC CGGATGCAGA TCGTCTATAA GCTGAAGCCG
CCGCTGGTGC ATGGCCTGCT GGGAACCGAC CAGCTGGGCC GCGACCTGAC CTCCATGCTG
ATGGTCGGGG CCTGGAATTC CCTGTCGACA GCCATGGCGG CTGTGGTGCT TGGCGCAGGC
GTCGGCACGC TGTTCGGCGT TACGGTTGCA GCGCGGCGCG GCATGGTCGA GGCGCTGACC
ATGCGGATCA ATGATGTGAT CTTCGCCATT CCGCCGATCC TGTCGGCCAT GATGCTCGGC
GCGCTGCTCG GCACAGGGCG GTTTACCGCC ATTATCGCCA TCGCCGTATT CATGGTGCCG
GTTTTTGCCC GCGTTACCGC CAGTGCGGCC CTCCAGGTCT GGTCGCGGGA TTATGTGCTG
GCGGCGCGTG CCGCAGGCAA GGGGCAGGTT CTCATTACCA TCGAACATGT CCTGCCCAAT
ATTGCCAGCC AGATCATCGT ACAGGTCGCC ATCCAGCTTG GTCTTGCCAT TCTGACCGAG
GCGGGCTTGA GCTTTCTTGG TCTCGGCATG CCGCCACCGG CGCCGACCTG GGGGCGGATG
CTGGCCGATT CCCAGACCTA TCTGGCTGCC GCGCCCTGGC TTGCCATCCT GCCGGGCCTG
GCCATTGCGC TCACCGTGCT CGGCTTCAAC ATGCTGGGCG ATGGGCTGCG CGATCTTCTC
GACCCGCGTG AAAAGGGGCG TTCATGA
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| Protein sequence | MTTTVTISKP STRRLTRLFL RPTLLIGGLI IILLVAIALL SLVWTPLPPT RMQIVYKLKP
PLVHGLLGTD QLGRDLTSML MVGAWNSLST AMAAVVLGAG VGTLFGVTVA ARRGMVEALT
MRINDVIFAI PPILSAMMLG ALLGTGRFTA IIAIAVFMVP VFARVTASAA LQVWSRDYVL
AARAAGKGQV LITIEHVLPN IASQIIVQVA IQLGLAILTE AGLSFLGLGM PPPAPTWGRM
LADSQTYLAA APWLAILPGL AIALTVLGFN MLGDGLRDLL DPREKGRS
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