| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5637 |
|---|
| Symbol | |
|---|
| ID | 7381111 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011988 |
|---|
| Strand | - |
|---|
| Start bp | 662095 |
|---|
| End bp | 662988 |
|---|
| Gene Length | 894 bp |
|---|
| Protein Length | 297 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 643649205 |
|---|
| Product | hydrolases or acyltransferases (alpha/beta hydrolase superfamily) |
|---|
| Protein accession | YP_002547442 |
|---|
| Protein GI | 222106651 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0596] Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) |
|---|
| TIGRFAM ID | [TIGR01250] proline-specific peptidases, Bacillus coagulans-type subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0678785 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGTCAAGTA TTGAAGGTTT CGCCCCTTAC GGCGAGTATC AGACCTGGTA TCGGATCACC
GGCGACCTCA CCTCCGGCAA GCCGCCGTTG ATCGTGGCGC ATGGCGGTCC CGGCTGCACC
CATGACTATG TCGATAGTTT CAGGGACATC GCCGCAACGG GCCGCGCCGT CATTCATTAC
GATCAGGTCG GCAATGGCAA ATCCACCCAT CTGCCCGACA AGGGCGGCGA CTTCTGGACG
GTGGCGTTTT TCAAGGCCGA ACTGCACAAT CTGATCGACC ATCTGGGCAT TCGGGGGGCC
TATTGCCTGC TCGGCCAATC CTGGGGCGGC ATGCTCGGCG CTGAATTTGC CGTGGATCAG
CCCGAAGGAC TGAAAGCCCT GGTGATCGCC AATTCGCCCG CCTCGCTGCG CACCTGGGTT
TCGGAAGCAA ACCGGCTGCG TGAAGCGTTG CCTGCTGACG TGCAGGCGAC ATTGCTGGCC
CACGAACAGG CGGAAACCAC CGACAGCGAA GAGTATATGA AGGCAACCGA TGTCTTCAAC
CAGCGCCATG TCTGCCGTGT CGTGCCGATG CCAGCAGAAG TACAGCGCAC CTTCGATGCG
ATTGCCGCCG ATCCGACCGT TTATCACACG ATGAACGGCC CCAATGAATT CCATGTCATC
GGCACCATGA AGGACTGGAC AATTGAGGGT CGGCTCTCGA CCATCAATGT CCCGACCCTG
CTGATTTCCG GCCGGTTCGA TGAGGCGACC GAAGCCTGCG TGCAGCCCTT TGCCGATGAG
ATCCCAGATG TGCGTTGGCG GATTTTCGAA CAGTCCAGCC ACATGCCGCA TGTGGAAGAG
CGCGATGCCT GCATGGCGGA AGTCAGCGCC TTCCTCGACC AGAAAGCGCC CTGA
|
|---|
| Protein sequence | MSSIEGFAPY GEYQTWYRIT GDLTSGKPPL IVAHGGPGCT HDYVDSFRDI AATGRAVIHY
DQVGNGKSTH LPDKGGDFWT VAFFKAELHN LIDHLGIRGA YCLLGQSWGG MLGAEFAVDQ
PEGLKALVIA NSPASLRTWV SEANRLREAL PADVQATLLA HEQAETTDSE EYMKATDVFN
QRHVCRVVPM PAEVQRTFDA IAADPTVYHT MNGPNEFHVI GTMKDWTIEG RLSTINVPTL
LISGRFDEAT EACVQPFADE IPDVRWRIFE QSSHMPHVEE RDACMAEVSA FLDQKAP
|
|---|
| |