Gene Avi_5582 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_5582 
SymboltogN 
ID7381064 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011988 
Strand
Start bp593371 
End bp594252 
Gene Length882 bp 
Protein Length293 aa 
Translation table11 
GC content58% 
IMG OID643649158 
ProductABC transporter membrane spanning protein (galacturonic acid) 
Protein accessionYP_002547395 
Protein GI222106604 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0395] ABC-type sugar transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.542291 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACTGATG CAGCACTTGC TTCCTCCCCG GACATCCATG CGCAGGAAAA ACGGCGCTGG 
CCGGTGTCCC TTATCCTGCA TATCGTTCTG GCGGCAGCCT CGCTGGTGAT GCTCTATCCG
CTGCTGTGGA TGCTGTCCGG TTCGATCAAG GACCAGAGCG AGATCTTCGG CCAGGCCTCA
CTGATCCCTT CGAAAGTGGA TTTCAGCGCC TATATGCGAG GCTGGTTCAG CACCCAGGTC
AGCTTCGGTA CCTATTTCTG GAACTCGCTG GTCATTGCCG TGCTGACCGT GGTGGGCAAT
CTGTTTTCCT GCTCGCTGGC GGCTTACGCC TTTGCCCGCC TGGAGTTTCG GGGCCGCAAT
ATTTGGTTCG CGCTGATGCT GGGGACGCTG ATGCTGCCGT ATCACGTCAC ACTCATCCCC
CAATATATCC TGTTTCTCGA ACTGGGATGG GTGAAGACCA TTCTGCCGCT CGTCGTGCCG
AAGTTTCTGG CGGTCGATGC GTTTTTCATC TTCCTGATGG TGCAGTTCTT CCGTGGTATC
CCGCGCGAAC TGGACGAGGC GGCGATGATG GACGGGTGCA GCCCCTGGCG GATCTATTGG
CGGATCATGA TGCCGCTCTC CCTGCCGGTG CTGGCGACGG CAGCGATCTT CTCCTTCATC
TGGAGCTGGG ATGATTTCTT CGGTCCGCTG ATCTATCTGA GCGATATCAA TACCTACACG
GTGCAGCTTG GGTTGCGGTC GTTCGTGGAC TCGACCGGCA GTTCCGACTG GAGCGGGCTG
TTTGCCATGT CCAGCCTGTC GCTGGTGCCG ATTTTCCTGA TTTTCCTGTT TTGCCAACGC
CTGCTGATCG ACGGTATCGC CACCGCCGGT CTGAAGCGTT GA
 
Protein sequence
MTDAALASSP DIHAQEKRRW PVSLILHIVL AAASLVMLYP LLWMLSGSIK DQSEIFGQAS 
LIPSKVDFSA YMRGWFSTQV SFGTYFWNSL VIAVLTVVGN LFSCSLAAYA FARLEFRGRN
IWFALMLGTL MLPYHVTLIP QYILFLELGW VKTILPLVVP KFLAVDAFFI FLMVQFFRGI
PRELDEAAMM DGCSPWRIYW RIMMPLSLPV LATAAIFSFI WSWDDFFGPL IYLSDINTYT
VQLGLRSFVD STGSSDWSGL FAMSSLSLVP IFLIFLFCQR LLIDGIATAG LKR