Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_5582 |
Symbol | togN |
ID | 7381064 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011988 |
Strand | + |
Start bp | 593371 |
End bp | 594252 |
Gene Length | 882 bp |
Protein Length | 293 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 643649158 |
Product | ABC transporter membrane spanning protein (galacturonic acid) |
Protein accession | YP_002547395 |
Protein GI | 222106604 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0395] ABC-type sugar transport system, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.542291 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACTGATG CAGCACTTGC TTCCTCCCCG GACATCCATG CGCAGGAAAA ACGGCGCTGG CCGGTGTCCC TTATCCTGCA TATCGTTCTG GCGGCAGCCT CGCTGGTGAT GCTCTATCCG CTGCTGTGGA TGCTGTCCGG TTCGATCAAG GACCAGAGCG AGATCTTCGG CCAGGCCTCA CTGATCCCTT CGAAAGTGGA TTTCAGCGCC TATATGCGAG GCTGGTTCAG CACCCAGGTC AGCTTCGGTA CCTATTTCTG GAACTCGCTG GTCATTGCCG TGCTGACCGT GGTGGGCAAT CTGTTTTCCT GCTCGCTGGC GGCTTACGCC TTTGCCCGCC TGGAGTTTCG GGGCCGCAAT ATTTGGTTCG CGCTGATGCT GGGGACGCTG ATGCTGCCGT ATCACGTCAC ACTCATCCCC CAATATATCC TGTTTCTCGA ACTGGGATGG GTGAAGACCA TTCTGCCGCT CGTCGTGCCG AAGTTTCTGG CGGTCGATGC GTTTTTCATC TTCCTGATGG TGCAGTTCTT CCGTGGTATC CCGCGCGAAC TGGACGAGGC GGCGATGATG GACGGGTGCA GCCCCTGGCG GATCTATTGG CGGATCATGA TGCCGCTCTC CCTGCCGGTG CTGGCGACGG CAGCGATCTT CTCCTTCATC TGGAGCTGGG ATGATTTCTT CGGTCCGCTG ATCTATCTGA GCGATATCAA TACCTACACG GTGCAGCTTG GGTTGCGGTC GTTCGTGGAC TCGACCGGCA GTTCCGACTG GAGCGGGCTG TTTGCCATGT CCAGCCTGTC GCTGGTGCCG ATTTTCCTGA TTTTCCTGTT TTGCCAACGC CTGCTGATCG ACGGTATCGC CACCGCCGGT CTGAAGCGTT GA
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Protein sequence | MTDAALASSP DIHAQEKRRW PVSLILHIVL AAASLVMLYP LLWMLSGSIK DQSEIFGQAS LIPSKVDFSA YMRGWFSTQV SFGTYFWNSL VIAVLTVVGN LFSCSLAAYA FARLEFRGRN IWFALMLGTL MLPYHVTLIP QYILFLELGW VKTILPLVVP KFLAVDAFFI FLMVQFFRGI PRELDEAAMM DGCSPWRIYW RIMMPLSLPV LATAAIFSFI WSWDDFFGPL IYLSDINTYT VQLGLRSFVD STGSSDWSGL FAMSSLSLVP IFLIFLFCQR LLIDGIATAG LKR
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